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Genotype-phenotype correlations among BRCA14153delA and 5382insC mutation carriers from Latvia
© Plakhins et al; licensee BioMed Central Ltd. 2011
Received: 6 March 2011
Accepted: 27 October 2011
Published: 27 October 2011
Mutations in the high penetrance breast and ovarian cancer susceptibility gene BRCA1 account for a significant percentage of hereditary breast and ovarian cancer cases. Genotype-phenotype correlations of BRCA1 mutations located in different parts of the BRCA1 gene have been described previously; however, phenotypic differences of specific BRCA1 mutations have not yet been fully investigated. In our study, based on the analysis of a population-based series of unselected breast and ovarian cancer cases in Latvia, we show some aspects of the genotype-phenotype correlation among the BRCA1 c.4034delA (4153delA) and c.5266dupC (5382insC) founder mutation carriers.
We investigated the prevalence of the BRCA1 founder mutations c.4034delA and c.5266dupC in a population-based series of unselected breast (n = 2546) and ovarian (n = 795) cancer cases. Among the BRCA1 mutation carriers identified in this analysis we compared the overall survival, age at diagnosis and family histories of breast and ovarian cancers.
We have found that the prevalence of breast and ovarian cancer cases (breast: ovarian cancer ratio) differs significantly among the carriers of the c.5266dupC and c.4034delA founder mutations (OR = 2.98, 95%CI = 1.58 to 5.62, P < 0.001). We have also found a difference in the prevalence of breast and ovarian cancer cases among the 1st and 2nd degree relatives of the c.4034delA and c.5266dupC mutation carriers. In addition, among the breast cancer cases the c.4034delA mutation has been associated with a later age of onset and worse clinical outcomes in comparison with the c.5266dupC mutation.
Our data suggest that the carriers of the c.4034delA and c.5266dupC founder mutations have different risks of breast and ovarian cancer development, different age of onset and prognosis of breast cancer.
Breast cancer is the most prevalent malignancy and the leading cause of death from cancer among women in Latvia. Ovarian cancer appears less frequent; however, it remains a significant cause of cancer mortality in Latvia and worldwide. Hereditary cancer syndromes account for up to 5-10% of breast cancer cases and for up to 5-15% of ovarian cancer cases [1, 2]. Germline mutations of the BRCA1 and BRCA2 genes represent the most significant and thus far the best characterized genetic risk factors for breast and ovarian cancer development . More than 1000 distinct cancer-associated BRCA1 [MIM 113705] mutations have been already described; however, not all of them are equally pathogenic and most probably there is a different cancer risk associated with specific mutations . In sporadic breast carcinoma, BRCA1 is rarely mutated, although expression frequently is limited by DNA methylation-induced gene suppression. The BRCA1 protein has been implicated in different biological processes, including DNA repair, cell cycle control, transcriptional regulation, centrosome duplication and tumour suppressor function .
Structural and functional changes of mutated proteins caused by different BRCA1 mutations are not identical and can lead to various phenotypes of cancers (genotype-phenotype correlations) . Therefore, clinical presentations, outcome and response to treatment of tumours can differ significantly depending on the type of mutations. In the case of pathogenic BRCA1 mutations, it has been previously shown that mutations in exon 11 (nucleotides 2388-4185) of the BRCA1 gene are associated with almost equal breast and ovarian cancer incidence among mutation carriers (breast:ovarian cancer ratio) in comparison with mutations in other parts of the BRCA1 gene. On the other hand, mutations located 3' of nucleotide 4185 are usually associated with a higher risk of breast cancer development and with a relatively lower ovarian cancer risk [2, 6]. Nevertheless, the genotype-phenotype correlations of the specific BRCA1 founder mutations c.4034delA (also described as 4153delA (or 4154delA) in exon 11) and c.5266dupC (5382insC in exon 20) have not been fully investigated. In this article, we describe some aspects of genotype-phenotype correlation among the c.4034delA and c.5266dupC mutation carriers identified in a population-based screening in Latvia which was observed in the prevalence of breast and ovarian cancer cases among the mutation carriers and their 1st and 2nd degree relatives, in the age of onset and in the clinical outcomes of breast cancer.
The study population is comprised of 2546 unselected breast cancer patients and 795 unselected ovarian cancer patients who, during the period from 2000 to 2009, underwent genetic counselling and BRCA1 founder mutation analysis at the Hereditary Cancer Outpatient Clinic of Pauls Stradins Clinical University Hospital in Riga, Latvia. Screening for the BRCA1 founder mutations c.4034delA and c.5266dupC was performed in different patient groups as follows: 1) in all the breast and ovarian cancer patients irrespective of family history (there were no exclusion criteria); 2) in patients with other cancer localizations and in healthy individuals when hereditary breast and ovarian cancer syndromes were suspected. The study was approved by the Ethical Committee of Riga Stradins University. All participants signed informed consent forms for participation in this study.
The information about the time of establishing breast cancer diagnosis, the TNM classification and the time and cause of death of cancer patients was confirmed in the Latvian Ministry of Health, the "Register of Patients Suffering from Particular Diseases, Patients with Cancer". The patients for the control group for breast cancer survival analysis were randomly selected from the breast cancer patients who were tested negative for the BRCA1 founder mutations, matched by tumour size, nodal status and age at diagnosis. Oestrogen receptor (ER), progesterone receptor (PR) and HER2/neu expression status was assessed using a standard immunohistochemical technique. The data on family histories were obtained from the database of the Hereditary Cancer Institute (in Riga Stradins University) as reported by probands. During genetic counselling the following data were collected using special questionnaires: the number of cancer cases among the 1st - 4th degree relatives in the family with indication of cancer localization in the affected relatives, the age of onset of cancer disease and the age of death. The presence of BRCA1 founder mutations c.4034delA and c.5266dupC was determined as described elsewhere .
Statistical analysis was performed using EpiCalc 2000 version 1.02 and SPSS, version 19. We estimated the survival function with the Kaplan-Meier estimator and calculated cumulative incidences as one minus survival function. Differences in survival and cumulative incidence were compared with the Log Rank test. Adjusted Hazard Ratios (HR) were estimated with Cox proportional hazard regression. Association between cancer type and mutation was assessed with Odds Ratios (OR) and associated Mantel-Haenszel 95% Confidence Intervals (CI). Comparison of two independent proportions was performed by Z-test.
1. Different breast:ovarian cancer ratios among c.4034delA and c.5266dupC mutation carriers
Molecular analysis of BRCA1 founder mutations among 2546 unselected breast cancer patients has revealed the presence of mutations in 96 (3.77%) cases, including 25 (0.98%) c.4034delA mutations and 69 (2.70%) c.5266dupC mutations. From 795 unselected ovarian cancer patients BRCA1 mutations were identified in 79 (9.90%) cases, including 41 (5.10%) c.4034delA and 38 (4.80%) c.5266dupC mutations.
Among the 107 breast and ovarian cancer patients who were identified as the mutation c.5266dupC carriers, breast cancer cases accounted for 64%; however, among the 76 breast and ovarian cancer patients c.4034delA mutation carriers breast cancer cases accounted only for 32% (OR = 2.98, 95% CI = 1.58 to 5.62, P < 0.001), which reflected the difference in the breast:ovarian cancer ratios among the carriers of these founder mutations. The difference in the breast:ovarian cancer relative risk associated with the c.5266dupC and c.4034delA founder mutations in this population-based series was calculated as RR = 1.70 (95% CI = 1.21 to 2.39, P < 0.001).
2. Age at diagnosis of breast and ovarian cancer
3. Survival analysis of breast cancer patients
The breast cancer survival analysis includes 25 mutation c.4034delA carriers, 68 mutation c.5266dupC carriers and 103 patients without mutations, with a median follow-up period of 103 months. There were 36 women who died from breast cancer (7 in the c.4034delA group, 11 in the c.5266dupC group and 18 in the control group) and 13 women who died from causes other than breast cancer: 5 women died from ovarian cancer (1 in the c.4034delA group, 3 in the c.5266dupC group and 1 in the control group), 4 from cancers of other sites (1 in the c.4034delA group, 1 in the c.5266dupC group and 2 in the control group) and 4 deaths unrelated to cancer. The last 4 cases were included in survival analysis, but were counted as the end of the follow-up period and not as death events.
Clinical characteristics of patients included in the survival analysis
N. of patients
Median age of onset (years)
T4 - n. (%)
T3 - n. (%)
T2 - n. (%)
T1 - n. (%)
Axillary node positive - n. (%)
ER/PR positive (%)
HER2 positive (%)
ER/PR/HER2 (Triple) negative (%)
N. of patients dead from cancer during follow-up period
Multivariable Cox-regression analysis of BRCA1 c.4034delA and c.5266dupC mutation carriers breast cancer patients
1.13 - 6.70
< 5 cm
0.15 - 0.86
> 5 cm
0.13 - 0.89
Age at diagnosis:
0.65 - 3.61
Multivariable Cox-regression analysis of breast cancer patients
0.81 - 1.48
< 5 cm
0.49 - 0.94
> 5 cm
0.37 - 0.77
Age at diagnosis:
0.66 - 2.17
4. Different prevalence of breast and ovarian cancer cases among relatives of c.4034delA and c.5266dupC mutation carriers
Family histories of BRCA1 c.4034delA and c.5266dupC mutations carriers
Types of family histories
No data about cancer cases among 1st and 2nd degree relatives
At least 3 cancer cases among 1st and 2nd degree relatives (including breast and ovarian)
At least 3 cancer cases among 1st and 2nd degree relatives (without breast and ovarian)
At least 4 cancer cases among 1st and 2nd degree relatives (including breast and ovarian)
Breast cancer families1
Breast and ovarian cancer families2
Total amount of families included
Prevalence of different cancer localizations among 1st and 2nd degree relatives of probands who were BRCA1 c.4034delA and c.5266dupC mutation carriers (in % of all the reported cancer cases in each group)
7.16 to 22.84
4.66 to 17.34
Other gynaecological cancers*
1.94 to 14.06
Colon and rectum
-2.75 to 3.75
-2.35 to 2.35
-2.12 to 3.52
-4.00 to 7.40
-0.28 to 7.88
Total amount of relatives reported as having cancer
In this study we investigated the prevalence of the most common BRCA1 founder mutations in a population-based series of breast and ovarian cancer cases in Latvia. Over the past several years, genetic counselling and screening of BRCA1 founder mutations have covered more than 50% of all breast and ovarian cancer cases registered in Latvia each year, thus providing information about the prevalence of hereditary cancer syndromes and BRCA1 founder mutations in unselected groups of breast and ovarian cancer patients. The fact that we investigated the prevalence of only 2 specific founder mutations is the major limitation of our study; however, according to the already published data, these 2 founder mutations account for more than 80% of all the BRCA1 mutations that were found among the cancer patients in Latvia [8, 9]. Several population-based studies performed in neighbour countries of Latvia (Lithuania, Belarus and Poland) have demonstrated that 3 founder mutations - c.4034delA, c.5266dupC and c.181T > G (300T/G) - are the most widespread BRCA1 founder mutations in the southern Baltic region [10–14]. Previous studies in Latvia have shown that the c.181T/G mutation accounts for only 6-10% of the identified BRCA1 mutations when genetic analysis had been performed in selected early-onset breast and ovarian cancers patients  or in specific Latvian regions . Nevertheless, according to our estimation the prevalence of the c.181T/G founder mutation among unselected breast and ovarian cancer patients in Latvia is much lower. The exact prevalence of BRCA1 founder mutations in Latvia is difficult to investigate due to relatively high heterogeneity of the Latvian population; however, in the analysis of a population screening of hereditary cancer syndromes in the Valka district of Latvia, the prevalence of BRCA1 founder mutations in the Latvian population was estimated at approximately 0.05% .
In our study we also found some phenotypic variations of hereditary breast and ovarian cancer syndromes among the c.4034delA and c.5266dupC mutation carriers. First of all, we observed a significant difference in the prevalence of c.4034delA and c.5266dupC mutation carriers among the breast and ovarian cancer patients. The breast:ovarian cancer ratio was higher among the c.5266dupC mutation carriers and lower among the c.4034delA mutation carriers. Despite the fact that some previous reports have shown an almost equal breast:ovarian cancer ratio among the c.4034delA and c.5266dupC mutation carriers in Latvia, in these studies genetic analysis was performed in relatively small hospital-based cohorts that can explain these discrepancies [8, 9]. BRCA1 c.4034delA was initially described as a low penetrance breast cancer mutation . Several other reports have demonstrated an increased prevalence of ovarian cancer cases among the c.4034delA mutation carriers [12–14]. In the analysis of hospital-based series of breast and ovarian cancer cases in Belarus the breast:ovarian cancer ratio among the c.4034delA and c.5266dupC mutation carriers was similar to the breast:ovarian cancer ratio obtained in our population-based series .
Several studies have shown some other phenotypic variations besides breast:ovarian cancer ratios associated with mutations, located in different parts of the BRCA1 gene. Satagopan et al found that the estimated lifetime risk of ovarian cancer development were two times as high for the c.68_69delAG (185delAG) mutation (66%) than for the c.5266dupC mutation (29%) . Al-Mulla et al showed that age-related expressivity and penetrance of breast and ovarian cancers depended on the mutation position in the BRCA1 gene and differed among the carriers of various mutations located in exons 2, 11 and 13 .
The genotype-phenotype correlation effect among the c.4034delA and c.5266dupC mutation carriers observed in our study had two other interesting features. The median age of onset of breast and ovarian cancers among the c.5266dupC mutation carriers was smaller than among the c.4034delA mutation carriers. A similar trend in the age of onset of breast cancer cases among the c.4034delA and c.5266dupC mutation carriers was previously shown in a hospital-based series of Belarusian breast cancer patients; however, in this report the median age at diagnosis of breast cancer was lower than in our population-based series (48 years in patients without mutations, 43 years in c.5266dupC carriers and 44 years in c.4034delA carriers) .
Despite many conflicting reports about the prognostic significance of BRCA1 mutations in breast cancer patients (where patients with different mutations were usually combined in common groups) [18–20], the influence of individual BRCA1 mutations on the clinical outcomes of breast cancer patients has not been fully investigated. In our study we observed a worse clinical outcome for the c.4034delA mutation carriers in comparison with the c.5266dupC mutation carriers and the sporadic breast cancer patients. To some extent, this observation can be attributed to the way a part of the patients were referred to genetic counselling. In many cases, patients were counselled when they were admitted to hospital due to a recurrence of the cancer process or appearance of cancers in other sites. Among the c.5266dupC mutation carriers, more than 20% of breast cancer patients were diagnosed with contralateral breast cancer, when the primary site had been successfully treated in some cases more than 20 years ago. Among the carriers of the c.4034delA mutation such cases were observed less frequently (there was only one case with a disease-free period of 10 years until contralateral breast cancer was diagnosed); however, there was a substantial amount of patients with a progression of primary breast cancer processes which dramatically reduced survival in many cases. In spite of this fact, worse overall survival among the c.4034delA mutation carriers was not associated with an advanced stage at diagnosis. The amount of cases with locally advanced and node positives breast cancers did not differ significantly among all groups of patients included in the survival analysis. Furthermore, the multivariable analysis has shown that the presence of the c.4034delA mutation remained an independent predictive factor. On the other hand, improved survival among the c.5266dupC mutation carriers could not be attributed to prophylactic surgery or increased surveillance strategies. Indeed, these options have become available for the breast cancer patients with BRCA1 mutations in Latvia just recently which might explain a relatively high amount of contralateral breast cancer cases among the carriers of both BRCA1 founder mutations.
Taken together, all the described above features show several aspects of genotype-phenotype correlation among the carriers of 2 specific BRCA1 founder mutations. Based on these data we can suggest that the carriers of the c.4034delA and c.5266dupC founder mutations have different risks of breast and ovarian cancer development, different age of onset and prognosis of breast cancer. The evaluation of the exact risk of specific genetic alterations in breast and ovarian susceptibility genes and possible synergistic effects between them can lead to a more precise prediction of the individual risk of developing specific cancers in hereditary breast and ovarian cancer patients. According to the suggestions of Mavaddat et al further decision about cancer surveillance and risk reducing strategies should take into account the individual risk differences based on the evaluation of the status of different genetic susceptibility factors . For example, due to the genotype-phenotype correlation effect, carriers of the c.4034delA mutation have a more significant predisposition to ovarian cancer than the c.5266dupC mutation carriers. This can suggest a much stronger indication of risk-reducing salpingo-oophorectomy among the carriers of this founder mutation. Although the c.5266dupC founder mutation in this study was associated with better prognosis, the risk of breast cancer among asymptomatic mutation carriers as well as the risk of contralateral breast cancer among breast cancer patients, carriers of this founder mutation, remains high. This indicates the necessity of intensive surveillance strategies with a recommendation of risk-reducing bilateral mastectomy for the carriers of this mutation. Several studies have shown that risk-reducing bilateral mastectomy reduces the risk of breast cancer among BRCA1 mutation carriers by approximately 90% and additional risk-reducing bilateral salpingo-oophorectomy improves this parameter by only 5% to a total of 95% [21, 22]. These data suggest that for carriers of the c.5266dupC mutation risk-reducing bilateral mastectomy without salpingo-oophorectomy can be sufficient risk-reducing option, especially for women of childbearing age.
Despite their approved effectiveness, most cancer preventive strategies frequently reduce the quality of life of patients and are usually associated with a unique set of social, emotional and sexual factors for BRCA1 mutation carriers and their family members which can influence the decision making processes in many cases [23, 24]. This issue indicates the importance of further clinical studies to evaluate the significance of different cancer prevention options among the carriers of specific genetic alterations in BRCA1 and other breast and ovarian cancer susceptibility genes.
In a population-based series of unselected breast and ovarian cancer cases in Latvia, the prevalence of breast cancer cases among the c.5266dupC mutation carriers was significantly higher in comparison with the c.4034delA mutation carriers, whereas the prevalence of ovarian cancer cases was almost similar. Among the c.4034delA mutation carriers, breast cancers were diagnosed at a later age and had worse clinical outcomes in comparison with the c.5266dupC mutation carriers. Based on our data we can suggest that carriers of the c.4034delA and c.5266dupC founder mutations have different risks of breast and ovarian cancer development, different age of onset and prognosis of breast cancer.
The study was supported by the National Research Programme "Development of new preventive, treatment, diagnostics means and practices and biomedicine technologies for improvement of public health (2010-2013)".
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