Skip to main content

Implication of genetic variants near SLC30A8, HHEX, CDKAL1, CDKN2A/B, IGF2BP2, FTO, TCF2, KCNQ1, and WFS1 in Type 2 Diabetes in a Chinese population



Recently, several genome-wide and candidate gene association studies have identified many novel genetic loci for type 2 diabetes (T2D); among these genes, CDKAL1, IGF2BP2, SLC30A8, CDKN2A/B, HHEX, FTO, TCF2, KCNQ1, and WFS1 are the most important. We aimed to determine the effects of these genetic loci associated with T2D in the Chinese Han population of China.


Single-nucleotide polymorphisms (SNPs) in or near CDKAL1, IGF2BP2, SLC30A8, CDKN2A/B, HHEX, FTO, TCF2, KCNQ1, and WFS1 genes were genotyped in a case-control Chinese Han sample living in Beijing, China involving 1024 patients with T2D and 1005 control subjects.


In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-specific odds ratios (ORs) as follows: 1.27 (95% CI, 1.11-1.45; p = 0.0008) for CDKAL1-rs10946398, 1.26 (95% CI, 1.08-1.47; p = 0.003) for IGF2BP2-rs4402960, 1.19 (95% CI, 1.04-1.37; p = 0.009) for SLC30A8-rs13266634, 1.22 (95% CI, 1.06-1.41; p = 0.005) for CDKN2A/B-rs10811661, 1.20 (95% CI, 1.01-1.42; p = 0.03) for HHEX-rs5015480, 1.37 (95% CI, 1.19-1.69; p = 1.0 × 10-4) for KCNQ1-rs2237892, and 1.24 (95% CI, 1.01-1.52; p = 0.046) for FTO-rs8050136 after adjustment for age, gender, and body mass index. Not only did an association between WFS1-rs6446482 and early-onset T2D exist in the subgroup analysis, but TCF2-rs7501939 and WFS1-rs6446482 were also confirmed to confer risk for T2D in this meta-analysis. Moreover, the relationship between FTO-rs8050136 and body mass index, together with the effect of CDKAL1-rs10946398 on beta cell function, was also observed in the control individuals.


Our findings support the important contribution of these genetic loci to susceptibility for T2D in the Chinese Han population in Beijing of China.

Peer Review reports


Genome-wide association studies (GWAS) have identified many novel susceptibility genes for type 2 diabetes (T2D) since 2007. In the early GWAS, common variants in IGF2BP2, CDKAL1, SLC30A8, HHEX, CDKN2A/B, FTO, and TCF2 loci were reported to increase the risk of T2D in Caucasians [16], and KCNQ1 was recently discovered as a new diabetogenic gene in Japanese samples [7]. In addition, the Wolfram syndrome 1(WFS1) gene is one of the novel susceptibility genes for T2D identified by the candidate gene approach in Caucasians until recently [8]. Compared with the susceptibility genes for T2D revealed in the following meta-analysis of GWAS [9], these 9 genes, which were discovered in relatively smaller samples, might represent the most diabetogenic genes and have larger effect sizes in the studied populations. Although these associations have been replicated in Caucasians, the roles of some loci remain less clear in Chinese. For example, in the Chinese Han population, the associations between single nucleotide polymorphisms (SNPs) at the HHEX, IGF2BP2, TCF2, and FTO loci with T2D were not consistently replicated [6, 1015], and the findings in previous studies involving Caucasians for SNPs at the WFS1 locus have not been confirmed [12]. Moreover, in contrast to the large-scale association studies in a European Caucasian population, such studies in China often have a relatively small sample size, and meta-analysis is becoming particularly useful to evaluate the effects of these genes.

Therefore, we hypothesized that the aforementioned genes were also the most important susceptibility genes for T2D in the Chinese Han population living in China. We aimed to test this hypothesis in a case-control study and perform a meta-analysis of all published data for these genetic loci in the Chinese Han population to fully evaluate their effects.



A total of 2029 individuals, including 1024 patients with T2D and 1005 control subjects, were included in the present study. All participants were unrelated and of Northern Han Chinese ancestry residing in the Beijing metropolitan area. The patients were recruited from the Endocrinology and Metabolism Outpatient Clinics of Peking University People's Hospital in Beijing, China, and were diagnosed with T2D in accordance with the 1999 WHO criteria (fasting plasma glucose ≥7.0 mmol/l and/or 2-h plasma glucose ≥11.1 mmol/l) [16]. Patients diagnosed with T2D before 30 years of age, those with an elevated body mass index (BMI; > 35 kg/m2), or those with other clinical and genetic features for specific-type diabetes (e.g., maturity onset diabetes of the young [MODY]) were excluded from the study [17, 18]. The control subjects were selected from communities near Peking University People's Hospital. The inclusion criteria for the control subjects in this study were as follows: (1) normal glucose regulation confirmed by a 75 g oral glucose tolerance test (OGTT) according to the 1999 WHO criteria (fasting plasma glucose <6.1 mmol/l and 2-h plasma glucose <7.8 mmol/l), (2) no family history of T2D, (3) >40 years of age, and (4) a BMI ≤ 35 kg/m2. The clinical features of the participants are summarized in Table 1. Informed consent was obtained from every participant, and the study protocol was approved by the Ethics Committee of Peking University People's Hospital.

Table 1 Clinical characteristics of the participants.

Anthropometric and biological measurements

All of the patients with T2D and control subjects were examined in the morning after an overnight fast for at least 8 hours, with measurements of height, weight, and blood pressure. Blood samples were collected for biochemical measurements of fasting plasma glucose for all the participants, and 2-hour plasma glucose during a 75 g OGTT for the controls. The plasma glucose concentrations were measured by the glucose oxidase-peroxidase method. The fasting serum insulin concentrations were measured by an electrochemiluminescence immunoassay on a Roche Elecsys 2010 Chemistry Analyzer. The homeostasis model assessment of the insulin resistance index (HOMA-IR) and beta-cell function (HOMA-ί) were assessed, as described previously [19].


Nine SNPs representing nine genes identified in recent GWAS or large candidate gene studies [18] were selected, including SLC30A8-rs13266634, HHEX- rs5015480, CDKAL1-rs10946398, CDKN2A/B-rs10811661, IGF2BP2-rs4402960, FTO-rs8050136, TCF2-rs7501939, KCNQ1-rs2237892, and WFS1- rs6446482. Genotyping of these SNPs was performed with an ABI SNaPshot® Multiplex System (Applied Biosystems, Foster City, CA, USA) in the Chinese National Human Genome Center in Shanghai. Genotyping accuracy, as determined from the genotype concordance between duplicate samples (130 samples), was 100%. The genotyping success rate was >95% for the patient and control groups.

Statistical analysis

Data are given as the means ± SD for quantitative variables with a normal distribution, and as medians (interquartile range) for non-normally distributed data. Fasting serum insulin, HOMA-IR, and HOMA-ί were natural logarithm-transformed to normal distributions before statistical analysis.

Characteristics were compared and tested for significant differences between patients and controls using Student's t test for continuous variables, and using χ2 test for categorical variable. Chi-squared tests were used to determine whether or not individual polymorphisms were in Hardy-Weinberg equilibrium (p > 0.05). The differences in allele and genotype frequencies between the patients with T2D and controls were analyzed using Pearson's χ2 test. Logistic regression analysis was performed to calculate risk allele-specific odds ratios (ORs), 95% confidential intervals (CIs), and corresponding p -values after adjustment for gender, age, and BMI as covariates; under an additive model, 10,000 permutations were used to obtain a true estimate for statistical significance.

Linear regression was applied to test quantitative variables for differences between the genotype groups. SNPs that showed nominal evidence for an association between the age of diagnosis (AOD) for T2D, fasting plasma glucose, fasting serum insulin, HOMA-ί, and HOMA-IR were adjusted by age, gender and BMI. Additionally, BMI was adjusted for age and gender. All analyses were adjusted using linear regression on a priori genotypic models (dominant, additive. and recessive). Due to a lack of validity of the large sample χ2 test statistic, only the dominant model was considered for SNPs with ≤10 individuals homozygous for the minor allele (for WFS1 and FTO loci in the present study).

All statistical tests were performed by PLINK, version 1.06 or SPSS, version 11.5 for Windows (SPSS, Inc., Chicago, IL, USA). A p-value < 0.05 was considered statistically significant (two-tailed).

Power calculations were performed using Quanto software (available at, and the powers shown in Additional file 1, Table S1 were calculated using ORs from published studies, sample sizes and minor allele frequencies (MAF) in the present study, the prevalence of T2D in Chinese of mainland China [20], and the type 1 error rate (0.05).

Pairwise linkage disequilibrium (LD) coefficients (r2) between SNPs were calculated by Haploview software, version 4.0 (Daly Lab at the Broad Institute, Cambridge, MA, USA).

To identify studies eligible for meta-analysis, MEDLINE citations (January 2000-January 2010) were surveyed using the National Library of Medicine's PubMed on-line search engine with each susceptibility gene name (CDKAL1, IGF2BP2, SLC30A8, CDKN2A/B, HHEX, KCNQ1, FTO, TCF2, and WFS1) and Chinese as key words. The retrieved references were read to identify studies that examined the allelic associations between the SNPs within the above nine genetic regions and T2D in Chinese Han living in China. For meta-analysis of WFS1, FTO, and TCF2, the C allele of WFS1-rs6446482, the A allele of FTO-rs8050136, and the T allele of TCF2- rs7501939 were used as surrogates for the minor A allele of WFS1- rs10010131, the A allele of FTO-rs9939609, and the G allele of TCF2-rs4430796 because they are in strong LD (r2 = 1) in a HapMap Chinese Han population. In the meta-analysis, Cochran's x2-based Q-statistic test was performed to assess heterogeneity in all of the studies included, and a random-effect model was adopted when heterogeneity existed, otherwise a fixed-effects model was appropriate. Combined ORs were calculated using the Mantel-Haenszel (fixed-effects) and DerSimonian and Laird (random-effects) tests. The significant P value of overall ORs was determined using the Z-test. All calculations for the meta-analysis were performed on Revman42 (provided by Cochrane-Collaboration, available at


Association study

We have successfully genotyped all nine SNPs. There were no significant departures from the Hardy-Weinberg equilibrium for all SNPs in the control group (p > 0.05) as assessed by a χ2 test. In Table 2, we present for each SNP the genotype and allele distributions, risk allele-specific ORs, and p-values under an additive genetic model after correction for gender, age, and BMI. The allele frequencies of all SNPs in our studied population (Additional file 1, Table S1) are comparable to those of the Chinese Han population and different from Europeans in HapMap (, accessed Feb 2009). The associations of 7 SNPs with T2D were observed, which included, as follows: CDKAL1-rs10946398 (OR, 1.27; 95% CI, 1.11-1.45; empirical p = 0.0008); IGF2BP2-rs4402960 (OR, 1.26; 95% CI, 1.08-1.47; empirical p = 0.003); SLC30A8-rs13266634(OR, 1.19; 95% CI,1.04-1.37; empirical p = 0.009); CDKN2A/B-rs10811661(OR, 1.22; 95% CI, 1.06-1.41; empirical p = 0.005); HHEX-rs5015480 (OR,1.20; 95% CI, 1.01-1.42; empirical p = 0.03); and KCNQ1-2237892 (OR, 1.37; 95% CI, 1.19-1.69; empirical p = 1.0 × 10-4). Interestingly, FTO-rs8050136 was also associated with T2D (OR, 1.25; 95% CI, 1.02-1.52; empirical p = 0.029), which remained significant after adjustment for age, gender, and BMI (OR,1.24; 95% CI, 1.01-1.52; empirical p = 0.046). However, no association with diabetes was found for TCF2-rs7501939 and WFS1 -rs6446482.

Table 2 Association with type 2 diabetes in the Chinese Han population.


All published studies and references are shown in Additional file 1, Table S2, which indicates the inconsistency for associations between HHEX, IGF2BP2, TCF2, and FTO with T2D, the low MAF of WFS1-rs6446482 and FTO-rs8050136, and the small sample sizes in all studies in Chinese compared with those in Caucasian populations. Except for the Li study [13] due to the lack of allelic frequencies, the data from other studies and the current study were included in this meta-analysis to improve the power in evaluating the collective evidence on the relationships of these nine genetic loci to T2D, especially HHEX, IGF2BP2, TCF2 FTO, and WFS1 genetic loci. Table 3 shows the outcome of the meta-analysis. Overall, the pooled ORs for T2D were significant for HHEX-rs5015480 (pooled OR,1.24; p < 0.00001), IGF2BP2-rs4402960 (pooled OR, 1.14; p = 0.0002), TCF2-rs7501939 (pooled OR, 1.16; p < 0.00001), FTO-rs8050136 (pooled OR, 1.17; p < 0.00001), WFS1-rs6446482 (pooled OR, 1.26; p = 0.009), CDKAL1-rs10946398 (pooled OR, 1.24; p < 0.00001), SLC30A8-rs13266634 (pooled OR, 1.19; p < 0.00001), CDKN2A/B-rs10811661 (pooled OR, 1.28; p < 0.00001), and KCNQ1-2237892 (pooled OR, 1.33; p < 0.00001).

Table 3 Meta-analysis for SNPs at nine genetic loci in the Chinese Han population living in China.

Genotype-phenotype relationship analysis

Genotype-age of diagnosis (AOD) for diabetes For the patients with T2D, multiple linear regression was used to evaluate the effect of nine representative SNPs on AOD with adjustment for gender and BMI under a priori models. The analysis revealed that only WFS1-rs6446482 was negatively related to AOD under a dominant model (p = 0.02), and the patients with one or two risk alleles of WFS1- rs6446482 were diagnosed approximately 3 years earlier than those without risk alleles (49 ± 11 years versus 52 ± 11 years, p = 0.03). Prompted by this observation, we performed a subgroup analysis of 406 early-onset T2D patients (age of diagnosis 45 years) and 973 control subjects, showing that WFS1- rs6446482 was significantly associated with early-onset T2D (risk allele-specific OR, 1.96; 95% CI, 1.05-4.76; nominal p = 0.03; empiric p = 0.03) after adjustment for gender, age, and BMI.

Genotype-BMI For analysis of the genotype-BMI relationship, only the control subjects were examined because the treatment for T2D might distort the relationship. Only FTO-rs8050136 of nine genetic loci was found to be significantly associated with BMI (p = 0.04) after adjusting for gender and age as covariates. The individuals with one or two risk alleles had a higher BMI (25. ± 3.3 kg/m2, n = 205) than those without a risk allele (24.8 ± 3.4 kg/m2, n = 790; p = 0.04).

Genotype-beta cell function and insulin resistance Because the insulin level might be influenced by a hyperglycemic agent, 493 non-diabetic control subjects with fasting insulin concentrations available were studied. Only at the FTO and CDKAL1 loci was a relationship between SNP and phenotype observed. As shown in Table 4, the individuals with a risk allele of FTO-rs8050136 had a higher HOMA-ί, HOMA-IR, BMI, and fasting serum insulin level than those without the risk allele(under a dominant model), and the effects of FTO on HOMA-ί, HOMA-IR, and the fasting serum insulin level were independent of gender, age, and BMI. In addition, CDKAL1-rs10946398 significantly affected beta cell function independent of gender, age, and BMI, and the individuals with 2 risk alleles had a lower HOMA-ί than those without a risk allele (under the recessive model).

Table 4 The genotype-phenotype relationship in control individuals at CDKAL1 and FTO genetic loci.


In the present study, we have replicated the associations between seven SNPs (CDKAL1-rs10946398, IGF2BP2-rs4402960, SLC30A8-rs13266634, CDKN2A/B-rs10811661, HHEX-rs5015480, FTO-rs8050136, and KCNQ1-rs2237892) with T2D in the Chinese Han population living in China, and an association between WFS1-rs6446482 with early-onset T2D was also identified in the subgroup analysis. For the genotype-phenotype analysis in control subjects, we found that the SNP at FTO loci showed a significant association with BMI, beta cell function, and insulin sensitivity. Moreover, we observed the influence of CDKAL1 on beta cell function, and our meta-analysis also indicated the SNPs at TCF2-rs7501939 and WFS1-rs6446482 were associated with T2D.

SLC30A8, HHEX, CDKAL1, CDKN2A/B, IGF2BP2, and FTO are among the first cohort of susceptibility genes discovered in relatively small samples by GWAS with ORs ranging from 1.14-1.20 [16]. In the present study, the OR values for the risk alleles range from 1.19-1.27, which are slightly higher than the Caucasian population [16], and slightly different from other Chinese studies. This is partly due to the features of our study (e.g., small sample sizes, enriched subjects with earlier onset T2D, and older subjects without a family history of T2D in the control group) or the difference in the studied population in genetic background as observed for the TCF7L2 and KCNQ1 genes in previous reports [7, 21, 22]. Based on our observation, we found that the minor allele frequencies of FTO, WFS1, TCF2, HHEX, and IGF2BP2 were much lower, while those of CDKAL1, CDKN2A/B, SLC30A8, and KCNQ1 were much higher than in the Caucasian population (Additional file 1, Table S1), indicating the different genetic background between Caucasians and the Chinese population. Our findings on CDKAL1, SLC30A8, CDKN2A/B, and KCNQ1 are further supported by several recent studies in the Chinese population [1012, 2327]. However, for IGF2BP2, no significant association was demonstrated with T2D [10, 11]. For HHEX, a relationship between the SNPs at the HHEX locus and T2D was reported among Chinese living in Shanghai, but not among Chinese in Beijing, even in the same study [10]. We believe that the inconsistent results of these studies are due, at least in part, to the small sample size [10] and the different enrollment criteria. For example, the plasma glucose at 2 hours during the OGTT was not determined and some subjects with impaired glucose tolerance(IGT) or T2D might have been falsely classified into the control group [10], or some adolescents in the control group may develop T2D in the future [11]. Therefore, the meta-analysis of the combined data from these published studies and our study is necessary for evaluating the association of these genetic loci with T2D and the effect of size in the Chinese population.

The studies in other ethnic groups have made clear that the association between FTO and T2D is mediated through its effect on body weight [2, 3, 28, 29]. In the present study, we have confirmed the association between FTO and BMI and T2D, and the association with T2D remained of borderline significance (p = 0.046), even after adjustment for BMI. The independent effect of FTO on T2D is consistent with a recent study [14]. It is worth noticing that the study results on FTO in a Chinese population have been conflicting. The study in Chinese living in Taiwan has reported this association with BMI, but not T2D [30]. However, another study in a Chinese population living in Shanghai did not show an association between FTO-rs8050136 and BMI or T2D [13]. The discrepancy is partly due to population-specific bias, insufficient power, and the effects of duration and treatment for T2D, which may have distorted the real relationships among BMI, genotypes, and T2D. Europeans and Asians are different in their environmental risk profiles, body composition, and genetic background. In particular, Asians are at risk for T2D at a lower level of obesity, partly due to their increased predisposition to visceral adiposity [31] and reduced pancreatic β-cell function [32]. Our pooled analysis demonstrated FTO really contributed to T2D in Chinese. Unfortunately, the individual BMI from all published studies are not available for meta-analysis and so it is difficult to determine whether or not the association is really independent of BMI. As observed in the present study, FTO-rs8050136 may directly or indirectly affect HOMA-ί and HOMA-IR, and a reasonable interpretation is that the control subjects who carry the risk allele of FTO are prone to insulin resistance, and are able to increase insulin secretion to completely compensate for low insulin sensitivity to keep glucose homeostasis. Thus, it is necessary to clarify the pathogenesis of the contribution of FTO to T2D.

It has been shown that common SNPs at the WFS1 locus are clearly associated with T2D in a Caucasian population [8, 33], but not in a Chinese population in a recent study with insufficient power [12]. However, we observed an association between WFS1-rs6446482 with T2D in our meta-analysis, and early-onset T2D in our own sample. Wolfram syndrome, characterized by early-onset diabetes, optic atrophy, deafness, and diabetes insipidus is due to mutations of the WFS1 gene [34], which regulates ί cell function in mice [35] and glucagon-like peptide 1-induced insulin secretion in humans [36], suggesting that impaired beta cell function in subjects with the risk allele of WFS1 may promote the onset of T2D as seen in other monogenetic diabetes [37, 38]. Thus, it is necessary to replicate this study in a larger sample and sequence this gene for real causative variants.

The C allele of rs7501939 and the A allele of rs4430796 in the TCF2 gene were shown by GWAS to confer risk for prostate cancer and are protective for T2D [5]. However, that study did not show a significant association between TCF2-rs7501939 with T2D in a Chinese sample [5], consistent with the results of our study. The negative finding should be attributed to the insufficient power of this study (Additional file 1, Table S1). Nevertheless, in another Chinese study involving TCF2-rs4430796 [38], the association was replicated. A meta-analysis of combined data from both the previous study [38] and our study in Chinese confirmed the findings.

There are now as many as 17 genetic loci associated with T2D. In our previous Chinese Han studies [22, 39, 40], we have assessed the effects of PPARG, KCNJ11, and TCF7L2, and successfully replicated the associations between the KCNJ11 and TCF7L2 loci with T2D. However, the remaining six genetic loci were identified by meta-analysis of GWAS, including JAZF1, TSPAN8-LGR5, THADA, ADAMTS9, NOTCH2-ADAM30, and MTNR1B, of which only MTNR1B in one study was shown to increase the risk for T2D and an increased fasting plasma glucose concentration in the Chinese Han [12, 41]. Therefore, further investigation with a large sample and meta-analysis is needed to confirm the roles in the Chinese Han population.


In summary, the present study has confirmed an association between genetic variations at CDKAL1, IGF2BP2, SLC30A8, CDKN2A/B, HHEX, KCNQ1, and FTO loci with T2D in the Chinese Han population living in China. Our meta-analysis has provided the evidence that the variants at TCF2 and WFS1 genetic loci also contribute to the genetic susceptibility for T2D in Chinese.


  1. Sladek R, Rocheleau G, Rung J, Dina C, Shen L, Serre D, Boutin P, Vincent D, Belisle A, Hadjadj S, Balkau B, Heude B, Charpentier G, Hudson TJ, Montpetit A, Pshezhetsky AV, Prentki M, Posner BI, Balding DJ, Meyre D, Polychronakos C, Froguel P: A genome-wide association study identifies novel risk loci for type 2 diabetes. Nature. 2007, 445: 881-885. 10.1038/nature05616.

    Article  CAS  PubMed  Google Scholar 

  2. Zeggini E, Weedon MN, Lindgren CM, Frayling TM, Elliott KS, Lango H, Timpson NJ, Perry JR, Rayner NW, Freathy RM, Barrett JC, Shields B, Morris AP, Ellard S, Groves CJ, Harries LW, Marchini JL, Owen KR, Knight B, Cardon LR, Walker M, Hitman GA, Morris AD, Doney AS, Wellcome Trust Case Control Consortium (WTCCC), Burton PR, Clayton DG, Craddock N, Deloukas P, Duncanson A, et al: Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes. Science. 2007, 316: 1336-1341. 10.1126/science.1142364.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Scott LJ, Mohlke KL, Bonnycastle LL, Willer CJ, Li Y, Duren WL, Erdos MR, Stringham HM, Chines PS, Jackson AU, Prokunina-Olsson L, Ding CJ, Swift AJ, Narisu N, Hu T, Pruim R, Xiao R, Li XY, Conneely KN, Riebow NL, Sprau AG, Tong M, White PP, Hetrick KN, Barnhart MW, Bark CW, Goldstein JL, Watkins L, Xiang F, Saramies J, et al: A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants. Science. 2007, 316: 1341-1345. 10.1126/science.1142382.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Saxena R, Voight BF, Lyssenko V, Burtt NP, de Bakker PI, Chen H, Roix JJ, Kathiresan S, Hirschhorn JN, Daly MJ, Hughes TE, Groop L, Altshuler D, Almgren P, Florez JC, Meyer J, Ardlie K, Bengtsson Bostrom K, Isomaa B, Lettre G, Lindblad U, Lyon HN, Melander O, Newton-Cheh C, Nilsson P, Orho-Melander M, Rastam L, Speliotes EK, Taskinen MR, Tuomi T, et al: Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels. Science. 2007, 316: 1331-1336. 10.1126/science.1142358.

    Article  CAS  PubMed  Google Scholar 

  5. Gudmundsson J, Sulem P, Steinthorsdottir V, Bergthorsson JT, Thorleifsson G, Manolescu A, Rafnar T, Gudbjartsson D, Agnarsson BA, Baker A, Sigurdsson A, Benediktsdottir KR, Jakobsdottir M, Blondal T, Stacey SN, Helgason A, Gunnarsdottir S, Olafsdottir A, Kristinsson KT, Birgisdottir B, Ghosh S, Thorlacius S, Magnusdottir D, Stefansdottir G, Kristjansson K, Bagger Y, Wilensky RL, Reilly MP, Morris AD, Kimber CH, et al: Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes. Nat Genet. 2007, 39: 77-983.

    Google Scholar 

  6. Steinthorsdottir V, Thorleifsson G, Reynisdottir I, Benediktsson R, Jonsdottir T, Walters GB, Styrkarsdottir U, Gretarsdottir S, Emilsson V, Ghosh S, Baker A, Snorradottir S, Bjarnason H, Ng MC, Hansen T, Bagger Y, Wilensky RL, Reilly MP, Adeyemo A, Chen Y, Zhou J, Gudnason V, Chen G, Huang H, Lashley K, Doumatey A, So WY, Ma RC, Andersen G, Borch-Johnsen K, et al: A variant in CDKAL1 influences insulin response and risk of type 2 diabetes. Nat Genet. 2007, 39: 770-775. 10.1038/ng2043.

    Article  CAS  PubMed  Google Scholar 

  7. Yasuda K, Miyake K, Horikawa Y, Hara K, Osawa H, Furuta H, Hirota Y, Mori H, Jonsson A, Sato Y, Yamagata K, Hinokio Y, Wang HY, Tanahashi T, Nakamura N, Oka Y, Iwasaki N, Iwamoto Y, Yamada Y, Seino Y, Maegawa H, Kashiwagi A, Takeda J, Maeda E, Shin HD, Cho YM, Park KS, Lee HK, Ng MC, Ma RC, et al: Variants in KCNQ1 are associated with susceptibility to type 2 diabetes mellitus. Nat Genet. 2008, 40: 1092-1097. 10.1038/ng.207.

    Article  CAS  PubMed  Google Scholar 

  8. Sandhu MS, Weedon MN, Fawcett KA, Wasson J, Debenham SL, Daly A, Lango H, Frayling TM, Neumann RJ, Sherva R, Blech I, Pharoah PD, Palmer CN, Kimber C, Tavendale R, Morris AD, McCarthy MI, Walker M, Hitman G, Glaser B, Permutt MA, Hattersley AT, Wareham NJ, Barroso I: Common variants in WFS1 confer risk of type 2 diabetes. Nat Genet. 2007, 39: 951-953. 10.1038/ng2067.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Zeggini E, Scott LJ, Saxena R, Voight BF, Marchini JL, Hu T, de Bakker PI, Abecasis GR, Almgren P, Andersen G, Ardlie K, Boström KB, Bergman RN, Bonnycastle LL, Borch-Johnsen K, Burtt NP, Chen H, Chines PS, Daly MJ, Deodhar P, Ding CJ, Doney AS, Duren WL, Elliott KS, Erdos MR, Frayling TM, Freathy RM, Gianniny L, Grallert H, Grarup N, et al: Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes. Nat Genet. 2008, 40: 638-645. 10.1038/ng.120.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Wu Ying, Huaixing Li, Loos Ruth JF, Yu Zhijie, Ye Xingwang, Chen Lihua, Pan An, Hu Frank B, Lin Xu: Common variants in CDKAL1, CDKN2A/B, IGF2BP2, SLC30A8, and HHEX/IDE genes are associated with type 2 diabetes and impaired fasting glucose in a Chinese Han population. Diabetes. 2008, 57: 2834-2842. 10.2337/db08-0047.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Ng Maggie, Park Soo Kyong, Oh Bermseok, Tam Claudia, Cho Min Young, Shin Doo Hyoung, Lam Vincent, Ma Ronald, So Yee Wing, Cho Shin Yoon, Kim Hyung-Lae, Lee Kyu Hong, Chan Juliana, Cho Nam: Implications of genetic variants near TCF7L2, SLC30A8, HHEX, CDKAL1, CDKN2A/B, IGF2BP2, and FTO in type 2 diabetes and obesity in 6,719 Asians. Diabetes. 2008, 57: 2226-2233. 10.2337/db07-1583.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Hu C, Zhang R, Wang C, Wang J, Ma X, Lu J, Qin W, Hou X, Wang C, Bao Y, Xiang K, Jia W: PPARG, KCNJ11, CDKAL1, CDKN2A-CDKN2B, IDE-KIF11-HHEX, IGF2BP2 and SLC30A8 are associated with type 2 diabetes in a Chinese population. PLoS One. 2009, 4: e7643-10.1371/journal.pone.0007643.

    Article  PubMed  PubMed Central  Google Scholar 

  13. Li H, Wu Y, Loos RJ, Hu FB, Liu Y, Wang J, Yu Z, Lin X: Variants in the fat mass- and obesity-associated (FTO) gene are not associated with obesity in a Chinese Han population. Diabetes. 2008, 57: 264-268. 10.2337/db07-1130.

    Article  CAS  PubMed  Google Scholar 

  14. Liu Y, Liu Z, Song Y, Zhou D, Zhang D, Zhao T, Chen Z, Yu L, Yang Y, Feng G, Li J, Zhang J, Liu S, Zhang Z, He L, Xu H: Meta-analysis Added Power to Identify Variants in FTO Associated With Type 2 Diabetes and Obesity in the Asian Population. Obesity (Silver Spring). 2010, advance online publication

    Google Scholar 

  15. Liu Y, Yu L, Zhang D, Chen Z, Zhou DZ, Zhao T, Li S, Wang T, Hu X, Feng GY, Zhang ZF, He L, Xu H: Positive association between variations in CDKAL1 and type 2 diabetes in Han Chinese individuals. Diabetologia. 2008, 51: 2134-2137. 10.1007/s00125-008-1141-6.

    Article  CAS  PubMed  Google Scholar 

  16. Alberti KG, Zimmet PZ: Definition, diagnosis and classification of diabetes mellitus and its complications. Part 1: diagnosis and classification of diabetes mellitus provisional report of a WHO consultation. Diabet Med. 1998, 15: 539-553. 10.1002/(SICI)1096-9136(199807)15:7<539::AID-DIA668>3.0.CO;2-S.

    Article  CAS  PubMed  Google Scholar 

  17. Han XY, Ji LN: Contribution of MODY2 gene to the pathogenesis of Chinese early onset familial type 2 diabetes. Beijing Da Xue Xue Bao. 2005, 18: 591-594.

    Google Scholar 

  18. Han XY, Liu CY, Ji LN: Contribution of MODY6 gene in the pathogenesis of familial type 2 diabetes in Chinese population. Zhonghua Yi Xue Za Zhi. 2005, 14: 2463-2467.

    Google Scholar 

  19. Matthews RD, Hosker JP, Rudenski AS, Naylor BA, Treacher DF, Turner RC: Homeostasis model assessment: insulin resistance and beta cell function from fasting plasma glucose and insulin concentrations in man. Diabetologia. 1985, 28: 412-419. 10.1007/BF00280883.

    Article  CAS  PubMed  Google Scholar 

  20. Gu D, Reynolds K, Duan X, Xin X, Chen J, Wu X, Mo J, Whelton PK, He J, InterASIA Collaborative Group: Prevalence of diabetes and impaired fasting glucose in the Chinese adult population: International Collaborative Study of Cardiovascular Disease in Asia (InterASIA). Diabetologia. 2003, 46: 1190-1198. 10.1007/s00125-003-1167-8.

    Article  CAS  PubMed  Google Scholar 

  21. Ng MC, Tam CH, Lam VK, So WY, Ma RC, Chan JC: Replication and identification of novel variants at TCF7L2 associated with type 2 diabetes in Hong Kong Chinese. J Clin Endocrinol Metab. 2007, 92: 3733-3737. 10.1210/jc.2007-0849.

    Article  CAS  PubMed  Google Scholar 

  22. Ren Q, Han XY, Wang F, Zhang XY, Han LC, Luo YY, Zhou XH, Ji LN: Exon sequencing and association analysis of polymorphisms in TCF7L2 with type 2 diabetes in a Chinese population. Diabetologia. 2008, 51: 1146-1152. 10.1007/s00125-008-1039-3.

    Article  CAS  PubMed  Google Scholar 

  23. Hu C, Wang C, Zhang R, Ma X, Wang J, Lu J, Qin W, Bao Y, Xiang K, Jia W: Variations in KCNQ1 are associated with type 2 diabetes and beta cell function in a Chinese population. Diabetologia. 2009, 52: 1322-1325. 10.1007/s00125-009-1335-6.

    Article  CAS  PubMed  Google Scholar 

  24. Liu Y, Zhou DZ, Zhang D, Chen Z, Zhao T, Zhang Z, Ning M, Hu X, Yang YF, Zhang ZF, Yu L, He L, Xu H: Variants in KCNQ1 are associated with susceptibility to type 2 diabetes in the population of mainland China. Diabetologia. 2009, 52: 1315-1321. 10.1007/s00125-009-1375-y.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  25. Qi Q, Li H, Loos RJ, Liu C, Wu Y, Hu FB, Wu H, Lu L, Yu Z, Lin X: Common variants in KCNQ1 are associated with type 2 diabetes and impaired fasting glucose in a Chinese Han population. Hum Mol Genet. 2009, 18: 3508-3515. 10.1093/hmg/ddp294.

    Article  CAS  PubMed  Google Scholar 

  26. Chen Z, Zhang X, Ma G, Qian Q, Yao Y: Association study of four variants in KCNQ1 with type 2 diabetes mellitus and premature coronary artery disease in a Chinese population. Mol Biol Rep. 2010, 37: 207-212. 10.1007/s11033-009-9597-0.

    Article  CAS  PubMed  Google Scholar 

  27. Xiang J, Li XY, Xu M, Hong J, Huang Y, Tan JR, Lu X, Dai M, Yu B, Ning G: Zinc transporter-8 gene (SLC30A8) is associated with type 2 diabetes in Chinese. J Clin Endocrinol Metab. 2008, 93: 4107-4112. 10.1210/jc.2008-0161.

    Article  CAS  PubMed  Google Scholar 

  28. Frayling TM, Timpson NJ, Weedon MN, Zeggini E, Freathy RM, Lindgren CM, Perry JR, Elliott KS, Lango H, Rayner NW, Shields B, Harries LW, Barrett JC, Ellard S, Groves CJ, Knight B, Patch AM, Ness AR, Ebrahim S, Lawlor DA, Ring SM, Ben-Shlomo Y, Jarvelin MR, Sovio U, Bennett AJ, Melzer D, Ferrucci L, Loos RJ, Barroso I, Wareham NJ, et al: A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity. Science. 2007, 316: 889-894. 10.1126/science.1141634.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Scuteri A, Sanna S, Chen WM, Uda M, Albai G, Strait J, Najjar S, Nagaraja R, Orr M, Usala G, Dei M, Lai S, Maschio A, Busonero F, Mulas A, Ehret GB, Fink AA, Weder AB, Cooper RS, Galan P, Chakravarti A, Schlessinger D, Cao A, Lakatta E, Abecasis GR: Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits. PLoS Genet. 2007, 3: 1200-1210. 10.1371/journal.pgen.0030115.

    Article  CAS  Google Scholar 

  30. Chang YC, Liu PH, Lee WJ, Chang TJ, Jiang YD, Li HY, Kuo SS, Lee KC, Chuang LM: Common variation in the fat mass and obesity-associated (FTO) gene confers risk of obesity and modulates BMI in the Chinese population. Diabetes. 2008, 57: 2245-2252. 10.2337/db08-0377.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Yoon KH, Lee JH, Kim JW, Cho JH, Choi YH, Ko SH, Zimmet P, Son HY: Epidemic obesity and type 2 diabetes in Asia. Lancet. 2006, 368: 1681-1688. 10.1016/S0140-6736(06)69703-1.

    Article  PubMed  Google Scholar 

  32. Torrens JI, Skurnick J, Davidow AL, Korenman SG, Santoro N, Soto-Greene M, Lasser N, Weiss G: Ethnic differences in insulin sensitivity and β-cell function in premenopausal or early perimenopausal women without diabetes: the Study of Women's Health Across the Nation (SWAN). Diabetes Care. 2004, 27: 354-361. 10.2337/diacare.27.2.354.

    Article  PubMed  Google Scholar 

  33. Franks PW, Rolandsson O, Debenham SL, Fawcett KA, Payne F, Dina C, Froguel P, Mohlke KL, Willer C, Olsson T, Wareham NJ, Hallmans G, Barroso I, Sandhu MS: Replication of the association between variants in WFS1 and risk of type 2diabetes in European populations. Diabetologia. 2008, 51: 458-463. 10.1007/s00125-007-0887-6.

    Article  CAS  PubMed  Google Scholar 

  34. Ishihara H, Takeda S, Tamura A, Takahashi R, Yamaguchi S, Takei D, Yamada T, Inoue H, Soga H, Katagiri H, Tanizawa Y, Oka Y: Disruption of the WFS1 gene in mice causes progressive beta-cell loss and impaired stimulus-secretion coupling in insulin secretion. Hum Mol Genet. 2004, 13: 1159-1170. 10.1093/hmg/ddh125.

    Article  CAS  PubMed  Google Scholar 

  35. Inoue H, Tanizawa Y, Wasson J, Behn P, Kalidas K, Bernal-Mizrachi E, Mueckler M, Marshall H, Donis-Keller H, Crock P, Rogers D, Mikuni M, Kumashiro H, Higashi K, Sobue G, Oka Y, Permutt MA: A gene encoding a transmembrane protein is mutated in patients with diabetes mellitus and optic atrophy (Wolfram syndrome). Nat Genet. 1998, 20: 143-148. 10.1038/2441.

    Article  CAS  PubMed  Google Scholar 

  36. Schäfer SA, Müssig K, Staiger H, Machicao F, Stefan N, Gallwitz B, Häring HU, Fritsche A: A common genetic variant in WFS1 determines impaired glucagon-like peptide 1 induced insulin secretion. Diabetologia. 2009, 52: 1075-1082. 10.1007/s00125-009-1344-5.

    Article  PubMed  Google Scholar 

  37. Lehman DM, Richardson DK, Jenkinson CP, Hunt KJ, Dyer TD, Leach RJ, Arya R, Abboud HE, Blangero J, Duggirala R, Stern MP: P2 promoter variants of the hepatocyte nuclear factor 4alpha gene are associated with type 2 diabetes in Mexican Americans. Diabetes. 2007, 56: 513-517. 10.2337/db06-0881.

    Article  CAS  PubMed  Google Scholar 

  38. Wang C, Hu C, Zhang R, Bao Y, Ma X, Lu J, Qin W, Shao X, Lu J, Xu J, Lu H, Xiang K, Jia W: Common variants of hepatocyte nuclear factor 1beta are associated with type 2 diabetes in a Chinese population. Diabetes. 2009, 58: 1023-1027. 10.2337/db08-1064.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  39. Wang F, Han XY, Ren Q, Zhang XY, Han LC, Luo YY, Zhou XH, Ji LN: Effect of genetic variants in KCNJ11, ABCC8, PPARG and HNF4A loci on the susceptibility of type 2 diabetes in Chinese Han population. Chin Med J (Engl). 2009, 122: 2477-2482.

    CAS  Google Scholar 

  40. Luo Y, Wang H, Han X, Ren Q, Wang F, Zhang X, Sun X, Zhou X, Ji L: Meta-analysis of the association between SNPs in TCF7L2 and type 2 diabetes in East Asian population. Diabetes Res Clin Pract. 2009, 85: 139-146. 10.1016/j.diabres.2009.04.024.

    Article  CAS  PubMed  Google Scholar 

  41. Rönn T, Wen J, Yang Z, Lu B, Du Y, Groop L, Hu R, Ling C: A common variant in MTNR1B, encoding melatonin receptor 1B, is associated with type 2 diabetes and fasting plasma glucose in Han Chinese individuals. Diabetologia. 2009, 52: 830-833. 10.1007/s00125-009-1297-8.

    Article  PubMed  Google Scholar 

Pre-publication history

Download references


We would like express our appreciation to all patients and control subjects who were involved in this study. We would also like to give our thanks to the Chinese National Human Genome Center (Shanghai) for genotyping services. This study was supported by the National Natural Science Foundation of China (30570873, 30771031), National Basic Research Program of China (973 program, 2006CB503900), 985 Program of Peking University (PUDC2007-2), National High Technology Research and Development Program (863 program, 2006AA02A409) and Development Fund of Peking University People's Hospital (RDC2007-27).

Author information

Authors and Affiliations


Corresponding author

Correspondence to Linong Ji.

Additional information

Competing interests

The authors declare that they have no competing interests.

Authors' contributions

XYH carried out this study and drafted the manuscript. LNJ contributed to the design of the study and the revision of this manuscript. YYL, QR, XYZ, FW, XQS, and XHZ offered experimental, analytic, and data assistance. All authors have read and approved this final manuscript.

Xueyao Han contributed equally to this work.

Electronic supplementary material

Rights and permissions

Open Access This article is published under license to BioMed Central Ltd. This is an Open Access article is distributed under the terms of the Creative Commons Attribution License ( ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Reprints and Permissions

About this article

Cite this article

Han, X., Luo, Y., Ren, Q. et al. Implication of genetic variants near SLC30A8, HHEX, CDKAL1, CDKN2A/B, IGF2BP2, FTO, TCF2, KCNQ1, and WFS1 in Type 2 Diabetes in a Chinese population. BMC Med Genet 11, 81 (2010).

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI:


  • Oral Glucose Tolerance Test
  • Risk Allele
  • Beta Cell Function
  • Wolfram Syndrome
  • Normal Glucose Regulation