The polycystic ovary syndrome (PCOS) is a common endocrinopathy affecting about 6% of women of child-bearing age [1]. It is classically characterised by chronic anovulation, hyperandrogenism and polycystic ovarian morphology on ultrasonography [2]. In addition, a close relationship exists between obesity, insulin resistance (IR) and PCOS [3, 4]. Despite a growing body of evidence demonstrating a substantial heritability of PCOS and the intrinsic impact of IR on the development of PCOS, its etiology and underlying pathophysiology still remains elusive.

To date, multiple genetic studies in PCOS have been performed examining genes coding for enzymes of steroid biosynthesis like CYP11, CYP17, CYP19, androgen receptor, insulin, insulin receptor and enzymes in the post-receptor signal cascade of insulin. However, a variant contributing substantially to the development of the PCOS phenotype was not detected [5–8]. Genome-wide association studies (GWAS) offer a new approach to gene discovery unbiased with regard to the presumed function of causal variants. Up to one million single nucleotide polymorphisms (SNP) that are distributed evenly across the whole genome are commonly used for this approach. In the field of human body weight regulation these studies already had a major impact on the identification of relevant polygenes. For instance, common variants in the fat mass and obesity associated gene (FTO) predispose to an elevated body mass index (BMI) with an increase of 0.36 kg/m² BMI units per risk allele. Homozygous risk allele carriers weighed about three kilograms more and had 1.67-fold higher odds for obesity compared to adults not inheriting the risk allele [9]. This robust association was also detectable in the first GWAS for early onset extreme obesity [10]. With regard to insulin sensitivity, a recent British study in healthy adults indicated an association between polymorphisms of the FTO gene and a decrease in insulin sensitivity, which was presumably BMI mediated [11]. Barber et al. additionally demonstrated an association between PCOS status and FTO obesity risk SNPs in a case-control study [12]. Using a similar approach, Attaoua et al. discussed the potential role of FTO variants for the glucose intolerance component of the metabolic syndrome in patients with PCOS [13]. Association with increased risk of obesity has also been demonstrated for SNP rs7566605 located ~10 kb upstream of the insulin-induced gene-2 (INSIG2), which was detected in the first population-based GWAS for body weight [14]. Results concerning the influence of this SNP on obesity risk are conflicting, as not all studies detected the association with obesity [15–18]. However, in a meta-analysis of case-control and family-based approaches comprising about 17,000 individuals a marginal effect of rs7566605 on obesity was still present [19]. Recently, Reinehr et al. showed a lower success rate of a lifestyle intervention for obese children homozygous for the risk allele C [20]. A solidly validated gene for type two diabetes mellitus (T2DM) is the transcription factor 7-like 2 gene (TCF7L2). Identified via a conventional genome wide linkage scan for T2DM and subsequent fine mapping [21], it had convincingly been confirmed in numerous studies including GWAS [22–24]. The gene codes for a stimulating regulator of proglucagon gene expression [25]. The proglucagon gene is post-translationally processed to produce GLP-1, a stimulator of insulin secretion and biosynthesis and it is an inhibitor of glucagon release [26]. GWAS reported association of a SNP in TCF7L2 with T2DM and IR in Caucasians [21, 27, 28] but a negative association to body weight [21, 28–30]. In PCOS patients, using a sample size and design similar to their FTO study [12], a case-control comparison did not provide evidence for an association of TCF7L2 variants with disease status [31]. A further (negative) correlation to weight status was robustly found for a non-synonymous polymorphism Val103Ile in the melanocortin-4 receptor gene (MC4R) [32–34]. Interestingly, another genetic locus in the vicinity of the MC4R was recently also detected by a large-scaled GWAS [35]. The respective SNP was associated with obesity; it is located 188 downstream of the MC4R; its effect is presumably exerted by an influence on the expression of the gene. Additionally, another SNP near the previously described one, was shown to be associated with waist circumference and insulin resistance [36].

Given the high prevalence of obesity in PCOS and the compelling evidence for a substantial genetic background of both PCOS and obesity, known obesity susceptibility genes emerge as eligible candidates that might also be involved in the development of PCOS. Therefore we examined the influence of the described genetic variants on obesity and other endophenotypes in patients with PCOS. We considered polymorphisms in or near FTO, INSIG2, TCF7L2 and MC4R that are all well supported by large data collections of GWAS or meta-analyses for our analyses in patients with PCOS.

The clinical and phenotypical characteristics of the investigated patients with PCOS as well as the estimated minor allele frequencies (MAFs) are given in Table 1. Table 1 also includes subgroup distributions according to the Rotterdam criteria (hyperandrogenism (HA), oligo-anovulation (OA) and polycystic ovaries (PCO)) as metabolic differences between theses subgroups have been described [45–48].

Exploration of associations between genotypes and metabolic/obesity related variables in patients with PCOS revealed some evidence for an association of variants in FTO and TCF7L2, whereas no indication of association was observable for SNPs in INSIG2 and MC4R (see Table 2). We estimated that each risk allele of the polymorphism rs9939609 of FTO increased the body weight by ~4.6 kg, whereas the BMI was increased by ~1.6 kg/m² and the waist circumference increased by ~3.5 cm. Of note, the effect size of rs9939609 on BMI in PCOS was larger than in unselected females from the general population in the same age range (see Figure 1). For the TCF7L2 polymorphism rs7903146 the per risk allele effect was ~4.2 kg body weight, ~1.4 kg/m² BMI and ~3.4 cm waist circumference, respectively (for details see Table 2). There was no evidence for a potentially strong interaction or a correlation between the FTO (adjusted effect 1.35 kg/m² in robust linear regression) and the TCF7L2 locus (adjusted effect 1.45 kg/m²). Moreover, FTO variant rs9939609 was associated with variables of insulin resistance (see Table 3). As an example, the estimated per risk allele effect was 3.25 mU/l for fasting insulin, which changed to 1.88 mU/l (95%CI 0.22 mU/l; 3.54 mU/l, p-value = 0.03), if BMI was added as a covariate to the regression model. Thus, even after correcting for BMI, a genetic effect of rs9939609 on fasting insulin levels was observed. By contrast, there was no evidence for an association of SNPs in INSIG2, TCF7L2 and MC4R with variables of insulin resistance (for details see Table 3).

	body weight [kg]			BMI [kg/m2]			waist [cm]
gene (SNP) minor allele	β	95% CI	p	β	95% CI	p	β	95% CI	p
FTO (rs9939609) A	4.60	(0.97;8.22)	0.01	1.56	(0.34;2.78)	0.01	3.49	(0.62;6.37)	0.02
INSIG2 (rs7566605) C	-1.38	(-5.23;2.48)	0.48	-0.35	(-1.66;0.95)	0.59	-1.89	(-4.92;1.15)	0.22
TCF7L2 (rs7903146) T	-4.18	(-8.20;-0.15)	0.04	-1.35	(-2.71;0.01)	0.05	-3.43	(-6.63;-0,24)	0.04
MC4R (rs2229616) T	-2.12	(-16.88;12.63)	0.78	-0.91	(-5.88;4.06)	0.72	1.14	(-10.01;12.29)	0.84
MC4R (rs17782313) C	0.33	(-3.75;4.42)	0.87	-0.01	(-1.36;1.39)	0.98	0.54	(-2.73;3.81)	0.75
MC4R (rs12970134) A	0.20	(-3.74;4.14)	0.92	-0.12	(-1.45;1.21)	0.86	0.52	(-2,64;3.69)	0.75

SNP = single nucleotide polymorphism; BMI = body mass index

	fasting insulin [mU/l]			HOMA-IR [μmol/lxmmol/l2]			AUCI [mUxh/l]
gene (SNP) minor allele	β	95% CI	p	β	95% CI	p	β	95% CI	p
FTO (rs9939609) A	3.25	(1.32;5.18)	0.001*	0.76	(0.29;1.23)	0.002*	35.92	(9.63;62.21)	0.01
INSIG2 (rs7566605) C	0.85	(-1.21;2.90)	0.42	0.33	(-0.18;0.83)	0.21	12.92	(-14.83;40.68)	0.36
TCF7L2 (rs7903146) T	-0.23	(-2.40;1.93)	0.83	-0.13	(-0.66;0.40)	0.63	-5.18	(-34.27;23.91)	0.73
MC4R (rs2229616) T	3.20	(-4.67;11.07)	0.43	-0.46	(-2.45;1.53)	0.65	-8.25	(-117.9;101.4)	0.88
MC4R (rs17782313) C	1.10	(-1.08;3.28)	0.32	0.17	(-0.36;0.70)	0.54	4.52	(-25.02;34.06)	0.76
MC4R (rs12970134) A	1.07	(-1.03;3.18)	0.32	0.20	(-0.31;0.71)	0.45	1.23	(-27.21;29.68)	0.93

SNP = single nucleotide polymorphism; HOMA-IR = homeostasis model assessment for insulin resistance; AUCI = area under the curve of insulin response

*both associations would have been "significant" at the alpha = 0.10 level if correction for multiple testing would have been applied resulting in adjusted p-values of 0.062 for rs9939609 and fasting insulin and 0.099 for rs9939609 and HOMA-IR

The influence of FTO intron 1 variation on body weight related phenotypes in patients with PCOS is underscored. In population-based GWAS the estimated per risk allele effect ranged between 0.36 kg/m² [9] and 0.66 kg/m² [49] for statistical models with a slightly different set of covariates. In our PCOS sample, we estimated an average effect of the FTO risk allele of 1.56 kg/m² (95%CI 0.34 kg/m²; 2.78 kg/m²) including age as a quantitative covariate. Thus, the impact of the FTO variants on BMI is larger in PCOS patients than in the general population with an average effect of the FTO risk allele of 0.46 kg/m² (95%CI 0.17 kg/m²; 0.75 kg/m²) as shown in Figure 1. Of note, our finding is surprisingly similar to those of other studies [12, 50]. Barber et al. report a per risk allele effect of 1.1 kg/m² (95%CI -0.9 kg/m²; 3.2 kg/m²) in their PCOS cases and only 0.5 kg/m² (95%CI -0.1 kg/m²; 1.3 kg/m²) in their controls [12]. Moreover, this study is, to our knowledge, the first to describe a correlation between FTO rs9939609 and insulin resistance or hyperinsulinemia in PCOS patients reflected in fasting insulin, HOMA-IR as well as in AUCI levels After strictly controlling for the multiple statistical tests performed here (multiple phenotypes and multiple SNPs) the adjusted p-value for FTO rs9939609 and fasting insulin was 0.062 and the related effect, though weaker, was still present even after statistically correcting for BMI. Other study groups could not demonstrate an association between FTO and IR in obese and T2DM patients, respectively [51, 52]. In PCOS, FTO variation seems to be a key marker for IR, either directly i.e. to some degree independent of BMI/obesity or secondary due to its impact on body weight which in turn has an impact on glucose intolerance and diabetes. Barber et al. at first demonstrated an association between FTO and PCOS status and hypothesized a mediation of this association by adiposity. However, in this British sample, no IR data were available. In a French sample FTO was associated with both glucose intolerance and metabolic syndrome [13] without finding an association to IR. The greater effect on BMI and association to IR in PCOS possibly reflects a pathogenetic function of the FTO gene in the development of PCOS. This study and the data from Barber et al. demonstrated, that the FTO gene does not influence any of the PCOS defining traits neither directly nor indirectly via an effect on obesity or IR. In this German cohort, it is even less frequently associated with PCO. In case of a pathogenetic role of FTO in PCOS, it seems to be limited to determine only the metabolic phenotype.

As second strongest signal, we found association between the T2DM susceptibility gene TCF7L2 risk allele and obesity related traits in patients with PCOS. The TCF7L2 obesity association was stochastically independent of the FTO association if assessed in a multiple regression analysis. While some did not find an influence on body weight [29, 30, 53–56], others have reported analogous associations of TCF7L2 and obesity related traits [28, 43, 57]. Despite possible effects related to differences in ascertainment schemes, multiple explanations for this conflicting findings are possible [57]. One possible explanation by Cauchi and collegues [43] is that the risk for T2DM related to TCF7L2 seems to be modulated by the obesity status of an individual with stronger effects in the obese. It is possible that our study picked-up this BMI-related effect of TCF7L2. As we observed no evidence for an association of TCF7L2 with IR or other PCOS specific symptoms, common variants of TCF7L2 most likely influence T2DM susceptibility through impairment of insulin secretion rather than IR [56, 58]. Interestingly, this observation is consistent with the PCOS data of Barber et al. [12] who failed to detect association of TCF7L2 variation but who do not report on the genotype dependent BMI-distribution.

Finally, our data on rs7566605 located ~10 kb upstream of INSIG2 and on markers in proximity to MC4R provided no evidence for an involvement in the development of PCOS or related endophenotypes.

In summary, we explored (mainly) GWAS-derived candidate gene markers for obesity and T2DM in patients with PCOS. We show that the impact of INSIG2, TCF7L2 and MC4R SNPs on multiple endophenotypes might either be rather weak or not present at all. For genetic variation in intron 1 of FTO we provide evidence for associations to metabolic aspects of PCOS with some emphasis on IR. Interestingly, the estimated effect on obesity seems to be larger than the effect derived from population-based samples. This stronger effect might well have implications for the etiology of the disease requiring focussed functional studies.