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Congenital thrombocytopenia associated with GNE mutations in twin sisters: a case report and literature review

Abstract

Background

Neonatal thrombocytopenia is common in preterm and term neonates admitted to neonatal intensive care units. The etiology behind neonatal thrombocytopenia is complex. Inherited thrombocytopenia is rare and usually results from genetic mutations.

Case presentation

Here we report a case of twins with severe inherited thrombocytopenia presented in the neonatal period who were shown to be compound heterozygotes for 2 UDP-N-acetylglucosamine 2-epimerase (GNE) gene mutations, c.1351C > T and c.1330G > T, of which c.1330G > T is a novel mutation.

Conclusion

These two GNE mutations may help in the diagnosis and management of thrombocytopenia diagnosed in neonates.

Peer Review reports

Background

Thrombocytopenia is defined as a platelet count < 150 × 109/L and is the most frequent hematological disorder observed in neonates admitted to the neonatal intensive care unit (NICU). This disorder has an incidence between 18 and 35% [1] It is known that reduced production of platelets induces thrombocytopenia, whose heritable forms are frequently caused by genes that regulate megakaryocytic differentiation and/or platelet production [2] With the development of diagnostic methods, neonatal thrombocytopenia, especially the congenital type, was linked to genetic mutations.

UDP-N-acetyl-glucosamine 2-epimerase/N-acetylmannosamine kinase (GNE), a key enzyme of sialic acid biosynthesis, initiates and regulates the biosynthesis of N-acetylneuraminic acid [3] Mutations in GNE have been identified in both hereditary inclusion body myopathy and Nonaka myopathy, which is also termed as distal myopathy with rimmed vacuoles (DMRV; MIM#605820) [2, 4] In recent years, the relationship between GNE mutations and congenital thrombocytopenia has been reported [3, 5,6,7,8] Here, we report a case of twin sisters who were shown to have novel combined heterozygous GNE mutations and diagnosed with refractory thrombocytopenia.

Case report

A 22-day-old female newborn exhibited a platelet count of 1 × 109/L and showed detectable traces of blood in her stools. At the same time, her twin sister also had a platelet count of 6 × 109/L. The twins were born 37 3/7 weeks of gestational through cesarean section to a mother who denies unfavorable obstetric or medical histories. Moreover, there was no history of thrombocytopenia in the family. When the newborns were admitted to the NICU, vital signs and physical examinations appeared normal. Blood laboratory studies showed severe thrombocytopenia and mild anemia in the twins. The size of their peripheral blood platelets was shown to range from normal to large and their mean platelet volume was 10.6–13.2 fl (reference range: 6.5-12 fl). Routine urine, stool, liver function and renal function tests all appeared as normal. TORCH- and platelet-associated antibodies were negative. Megakaryocytes in the bone marrow showed normal morphology, but their maturation was hindered. Whole exon sequencing (WES) analysis revealed novel compound heterozygous mutations in exon 6 of the GNE gene (Fig. 1a), including c.1351C > T, (p. Arg451*) and c.1330G > T, (p. Asp444Tyr) (Fig. 1b, c). No other gene mutations related to thrombocytopenia were identified. A genogram directly confirmed that the twins were compound heterozygotes for these mutations (Fig. 1d). In the Genome Aggregation Database (gnomAD), the occurrence frequency of the two mutations was found to be 4/251452 (c.1351C > T) and 1/251452 (c.1330G > T). The c. 1330G > T was found to be a novel mutation. Despite being reported in HGMD as described by Tomimitsu [9] et al and Mori-Yoshimura [10] et al, c.1351C > T mutations associated with thrombocytopenia are first reported here. The p. Arg451* based reference sequence NM_005476.6 is a non-sense mutation. Furthermore, mutation pathogenicity prediction software, including Sorting Intolerant From Tolerant (SIFT), Polyphen2, LRT, MutationTaster, PredictSNP (https://loschmidt.chemi.muni.cz/predictsnp/) and FATHMM, predicted that the c.1330G > T mutation was harmful and destabilizing. Homology modeling was performed for the wild-type or mutant proteins using the SWISS-MODEL server (https://swissmodel.expasy.org/). As shown in Fig. 1e, c.1351C > T results in the deletion of 8 amino acids starting at position 451, whereas c.1330G > T results in an Asp to Tyr mutation at position 444. Therefore, the twins were diagnosed with congenital thrombocytopenia associated with GNE mutations.

Fig. 1
figure1

Sequencing and a genogram of the Trio. a:Schematic diagram of GNE exons. Mutation positions were labeled with black lines. b: The c.1351C > T mutation. This mutation is a non-sense mutation, where arginine (Arg) mutates to a termination codon, which is inherited from the mother. c: The c.1330G > T mutation. This mutation is inherited from the father and is a missense mutation, resulting when aspartic acid (Asp) mutates to tyrosine (Tyr). d: Parents are carriers of each mutation and show no phenotypes. The twins simultaneously inherited two mutations from their parents and presented with refractory thrombocytopenia several days after birth. e: 3D homology model changes induced by the c. 1330G > T and c.1351C > T mutations

The twins received platelet and intravenous immunoglobulin (IVIG) transfusions soon after admission to the NICU given their severe thrombocytopenia, but their baseline platelet counts remained as less than 10 × 109/L. After a 3-month follow-up, the twins did not show bleeding or signs of muscle wasting.

Discussion and conclusion

The human GNE gene (NM_001128227.2), localized on chromosome 9p13.3, consists of 14 exons and encodes 724 amino acids [3, 5, 6, 11] The protein encoded by this gene is a bifunctional enzyme that initiates and regulates the biosynthesis of N-acetylneuraminic acid (NeuAc), which is a precursor of sialic acid [12].

Mutations in the GNE gene decreases its enzymatic activity and affects the two initial steps in sialic acid biosynthesis. As a result, sialic acid production decreases and consequently, sialylation, or the incorporation of sialic acid to glycoproteins and glycolipids, also decreases [13] Hyposialylation was previously identified in mouse models of GNE myopathy [14] More than 10 GNE gene mutations have been reported in human DMRV. However, the exact mechanisms behind GNE defects leading to DMRV are still not fully understood.

As a major determinant of cell surface sialylation in human hematopoietic cell lines and a critical regulator of cell surface adhesion molecules [15], GNE is also expressed in bone marrow. Sialic acid is known to play significant roles in platelet functions and is located in the platelet membrane, forming during glycosylation. Several groups have shown that platelets deficient in sialylation are removed from circulation, resulting in shortened circulation lifetimes and thrombocytopenia [16]

In 2014, two families diagnosed with DMRV associated with thrombocytopenia were reported. Izumi et al [2] reported that two adult siblings diagnosed with DMRV and thrombocytopenia harbored two compound heterozygous GNE mutations, p.V603L and p.G739S. Zhen et al [17] reported that two adult siblings in a DMRV family exhibited thrombocytopenia and showed compound heterozygous GNE mutations including a missense mutation c.649 T > C, (p.Y217H) and a frameshift mutation c.1543–1544 del GA, (p.D515Qfs*2). These patients showed mild-to-moderate thrombocytopenia and no obvious bleeding.

In 2018, it was reported that GNE mutations cause thrombocytopenia without associated myopathy. Futterer et al [8] reported that two cousins in a consanguineous family manifested moderate to severe bleeding associated with severe thrombocytopenia and required regular platelet transfusions. In addition, homozygous mutations c. 1246 G > A, (p. G416r) in the GNE gene were detected. Revel-Vilk et al [18] summarized nine patients from three families all exhibiting thrombocytopenia and mild to moderate hemorrhagic tendencies. All of these individuals contained compound homozygous or heterozygous mutations in GNE, of which eight of the nine patients in showed no evidence of myopathy and one patient with neuromuscular symptoms showed a muscle biopsy inconsistent with GNE myopathy.

In the case of the twins described here, refractory severe thrombocytopenia was identified in the neonatal period and two novel compound heterozygous GNE mutations, p.Arg451* and p.Asp444Tyr, were detected using whole-exome sequencing. Compared with other reports, these twins are some of the youngest reported and their baseline platelet counts were of the lowest values when they were diagnosed. Consistent with other reports [17, 19, 20], mutations in GNE associated with thrombocytopenia were within the N-acetylmannosamine (ManNAc) kinase domains of the GNE protein. Thus, this domain may be an interesting site for further investigation related to congenital thrombocytopenia associated with GNE mutations.

In summary, in this report, we describe twins with two novel compound heterozygous GNE mutations, including p.Arg451* and p.Asp444Tyr, who manifested only severe thrombocytopenia without myopathy. Yet the role of GNE protein in the synthesis and functions of platelet requires further investigation.

Availability of data and materials

The datasets analysed during the current study are available in the 360 medical repository(https://yunpan.360.cn/surl_yPErJZuASnH).

NM_005476.6(genebank https://www.ncbi.nlm.nih.gov/nuccore/NM_005476.6).

NM_001128227.2(genebank https://www.ncbi.nlm.nih.gov/nuccore/NM_001128227.2).

Abbreviations

GNE :

UDP-N-acetyl-glucosamine 2-epimerase/N-acetylmannosamine kinase

NeuAc:

N-acetylneuraminic acid

ExAC:

Exome Aggregation Consortium

gnomAD:

Genome Aggregation Database

SIFT:

Sorting Intolerant From Tolerant

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Acknowledgments

We first thank the patients and their parents. We are also grateful to CIPHER GENE company, providing us the whole-exome sequencing and data analysis.

Funding

No funding was received.

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Authors

Contributions

YL, ML, JT, ZCY, SJK, YJT participated in the management of the patients, acquired the clinical data, and prepared the samples from the family members. XL, TB drafted the initial manuscript, and reviewed and revised the manuscript. All authors approved the final manuscript as submitted and agree to be accountable for all aspects of the work.

Corresponding author

Correspondence to Tao Bo.

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Ethics approval and consent to participate

This study was approved by the Ethics Committee of the 3rd Xiangya Hospital, Central South University. Written informed consent was obtained from the parents of the patient.

Consent for publication

Written informed consent was obtained from the parents for publication of this case report.

Competing interests

The authors have no conflicts of interest to disclose.

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Li, X., Li, Y., Lei, M. et al. Congenital thrombocytopenia associated with GNE mutations in twin sisters: a case report and literature review. BMC Med Genet 21, 224 (2020). https://doi.org/10.1186/s12881-020-01163-2

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Keywords

  • Congenital thrombocytopenia
  • UDP-N-acetyl-glucosamine 2-epimerase/N-acetylmannosamine kinase (GNE)
  • Sialic acid
  • Neonates
  • Twins