- Case report
- Open Access
Keratinocytic epidermal nevus syndrome with Schwann cell proliferation, lipomatous tumour and mosaic KRAS mutation
BMC Medical Genetics volume 16, Article number: 6 (2015)
Keratinocytic epidermal nevus syndrome (KENS) is a complex disorder not only characterized by the presence of epidermal nevi but also by abnormalities in the internal organ systems. A small number of cases with KENS are molecularly characterized and reported in the literature with somatic activating RAS, FGFR3 and PIK3CA mutations.
In this study we present a patient with hyper- and hypopigmented regions, verrucous pigmented skin lesions and a paravertebral conglomerate tumour at the level of the cervical and thoracic spine. A large lipomatous dumbbell tumour caused atrophy of the spinal cord with progressive paraparesis. We identified a mosaic c.35G > A (p.Gly12Asp) KRAS mutation in the pigmented verrucous epidermal nevus tissue, the intraneural schwann cells and the lipoma. The c.35G > A (p.Gly12Asp) KRAS mutation was absent in the peripheral blood leukocytes.
We conclude that KENS, the intraneural Schwann cell proliferation and the lipoma in this individual were caused by a postzygotic and mosaic activating c.35G > A (p.Gly12Asp) KRAS mutation.
Ras proteins play a crucial role in cellular growth factor signaling. RAS mutations, found in 30% of human tumours, have an activating effect on the protein, are oncogenic and activate a number of downstream pathways .
Non-organoid keratinocytic epidermal nevus (KEN) is characterized by benign congenital hyperpigmented skin lesions following Blaschko’s lines. Epidermal nevi with localized epidermal thickening are present at birth or become visible during early childhood. KEN in association with extracutaneous lesions in brain, muscular skeleton or eye is defined as keratinocytic epidermal nevus syndrome (KENS). Neurological abnormalities can include seizures, cognitive impairment, developmental delay and hemiparesis. Potential skeletal abnormalities are abnormal curvature of the spine and incomplete bone formation.
Mosaic FGFR3, PIK3CA and RAS mutations are recognized in KEN with HRAS as the most prevalent mutated gene [2-4]. RAS mutations are reported in mosaic RASopathies i.e. non-organoid KEN, sebaceous nevus and in extra-cutaneous manifestations of the corresponding syndromes, KENS and Schimmelpenning syndrome [5,6].
Only a few patients with epidermal nevus syndrome are molecularly characterized. In the context of understanding the phenotype-genotype in RASopathies, especially in epidermal nevus, we describe a patient with hyperpigmentation and severe neuroskeletal abnormalities.
The patient was born by Caesarean section (weight 3760 g, length 55 cm) and developed normal speech, while motor development was delayed (free sitting at 12 months, back to belly turn at 13 months, pulling into stand at 18 months). Within the first years of life, the patient developed pain in the left arm as well as progressive paraparesis. Surgical removal of compressive intraspinal, extramedullar components of a tumour was performed at the age of 4 years with tumour reduction and partial relief of symptoms.
At 14 and 16 years of age follow up MRI demonstrated a large paravertebral conglomerate tumour next to the cervical and thoracic spine with extensive additional intraspinal components (Figure 1a-d). Consecutively, there was severe narrowing of the spinal canal with spinal cord compression. The intraspinal tumour was a long cylindrical, inhomogeneously configured mass, which filled the spinal canal incompletely from C3 to T1. In addition, there was a remarkably large intraspinal lipoma located between C5 to C7, which showed typical bright pillow-like tissue (fat isointense on T1 weighted imaging) presenting dark in T2-weighted fat suppressed sequences. The spinal nerves (C3-T1) on both sides showed cylindrical or dumbbell-like thickening with intraspinal expansion, so that the spinal cord was compressed from the right side below C3. Consecutively, there was atrophy of the spinal cord below segment T2. Additionally a right convex thoracolumbar scoliosis was found. Cranial MRI showed no abnormalities. Ophthalmologic examination showed bilateral impaired vision (50%) and astigmatism with no Lisch nodules or other abnormalities.
At follow-up at 17 years of age he showed a large hyperpigmentation and hypopigmentation of upper body parts ranging from the trunk to the arms. There was partly polycyclic/polygonal hyperpigmentation of chest and back (Figure 2a,b), more pronounced on the left. An interscapular large segmented dark hyperpigmentation area with a verruccal epidermal nevus of about 20 × 10 cm and 15 × 3 cm was present (Figure 2c). The hyperkeratotic surface was partially fissured and the patches sharply bordered. Repeated admissions to clinical geneticists raised suspicion upon a genetic disorder and the tentative diagnosis of Neurofibromatosis type 1 was made.
Neurological examination showed mild talipes equinovarus and slow progressive incomplete paraparesis of the legs with increased muscle tonus and spasticity. There was a positive Babinski reflex (pyramidal sign) and a missing cremaster- and sphincter ani reflex. Cranial nerve dysfunction was not seen. Since there was chronic slow progressive weakness of finger extension of digits III-V of the left hand, grabbing is only possible with digit I and II. To date there is still progressive transversal spinal cord syndrome with spasticity, paraparesis and pain. The patient is wheel chair bound and only can stand upright with assistance. The patient has a proximal neuropathy and no evidence for a distal neuropathy, since electromyography analysis is normal. Recent whole body MRI and DXA showed osteopenia, although normal FGF23 and low vitamin D levels were present in the blood sample of this individual.
At age 4 after tumor removal histology was performed of skin (verruca), intraneural tissue and lipoma tissue.
Materials and methods
For routine diagnostics an H&E staining was performed on 4 μm thick sections from formalin-fixed, paraffin-embedded (FFPE) tissue. For immunohistochemical labelling sections from FFPE tissue were pretreated and incubated with primary antibodies against S-100-protein (DAKO, Hamburg, Germany, # Z 0311, 1:8000), epithelial membrane antigen (EMA, DAKO, # M 0613, 1:200) and neurofilament (DAKO, # M0762, 1:800) in an automated stainer (Ventana Medical Systems, Tucson, AZ, USA) according to standard protocols. As detection was the peroxidase method used with diaminobenzidine as chromogen (Ultraview DAB, 760–500, Ventana).
The DNA was extracted from blood and three FFPE tissue samples (verrucous skin, intraneural perineurioma and lipoma) by use of standard techniques. All DNA samples were screened for the following RAS and PIK3CA mutations: c.37G > C (p.Gly13Arg) in HRAS (NM_005343.2) and c.35G > A (p.Gly12Asp) in KRAS (NM_004985.3) and c.1258 T > C (p.Cys420Arg), c.1624G > A (p.Glu542Lys) and c.3140A > G (p.His1047Arg) in PIK3CA (NM_006218.2). In total, 5 primer pairs were designed to maximum amplify the corresponding fragments of 300 bp (primer sequences available on request). All primers were tagged with M13 sequences to facilitate sequencing. The PCR products were bidirectionally Sanger sequenced and run on an ABI sequencer.
All procedures performed were in accordance with the Declaration of Helsinki.
Histological sections of the three samples showed a typical lipoma and skin with hyperplasia confirming verrucous epidermal hyperplasia. In the nerve tissue ganglion cells and spindle shaped cells arranged in concentric patterns were observed resembling a perineurioma or onion bulb formation, morphologically not consistent with a schwannoma or neurofibroma. There was no nuclear atypia and no mitoses.
Upon immunohistochemical labelling with antibodies against S100 protein, neurofilament and EMA, the onion bulb structures were strongly positive for S-100-protein (Figure 3 upper row) and commonly contained a neurofilament-positive central axon (Figure 3 lower row). No EMA expression was detected (Figure 3).
Previously, neurofibromatosis type 1 was clinically and genetically ruled out. None of the specific mutations in the HRAS or PIK3CA genes were found in the DNA extracted from the three tissue samples. However, in all three samples the c.35G > A (p.Gly12Asp) missense mutation in the KRAS gene was detected. The c.35G > A (p.Gly12Asp) mutation in KRAS was in all three samples present in a heterozygous state (Figure 4), with an average allele frequency of 44% in the hyperpigmented verrucous skin sample, 49% in the tumor sample with the concentric intraneural Schwann cell proliferation and 56% in the lipoma sample based on peak height of both nucleotides at position 35. No c.35G > A (p.Gly12Asp) mutation in the KRAS gene was detected in DNA extracted from peripheral white blood cells from the patient.
The dermatological features of the reported patient are in accordance with the phenotype of previously described patients with KENS. The patient in this study presented with hyper- and hypopigmented regions and with verrucous hyperpigmented skin lesions. In addition a paravertebral conglomerate tumour was present next to the cervical and thoracic spine with a large intraspinal lipoma causing compression and atrophy of the spinal cord with progressive paraparesis. It is the first time that a myelopathy/proximal neuropathy in combination with the presence of a lipoma is reported in KENS. Further we could identify Schwann cell proliferation within the nerve resembling onion bulb formation, however, a typical schwannoma, as described by Bertola et al. 2012 in a patient with a germline KRAS (p.Lys5Glu) mutation , was not demonstrated. Recently epidermal nevus syndrome was described in a patient with an intra-spinal lipoma and cervical root neurofibromas . In the same paper a further case had MRI changes suggestive for lumbo-sacral nerve root tumours which were asymptomatic. This patient was clinically diagnosed with CLOVES syndrome without co-occuring epidermal nevi.
We identified the same c.35G > A (p.Gly12Asp) KRAS mutation in the hyperpigmented verrucous skin tissue, intraneural perineurioma and lipoma. This mutation was not detected in the corresponding leukocytes of the same patient. The data confirm the diagnosis of KENS as a mosaic RASopathy. This mutation has not been reported as a germline mutation in individuals with Noonan or CFC syndrome and the clinical phenotype is distinctive compared to these syndromes. The c.35G > A (p.Gly12Asp) KRAS mutation has extensively been reported in tumour tissue described in the open access database COSMIC (Catalogue Of Somatic Mutations In Cancer) suggesting its strong oncogenic character. COSMIC contains information on publications, samples and mutations in cancer tissues. Codon 12 is the most frequently mutated codon of KRAS in malignancies. The c.35G > A (p.Gly12Asp) KRAS mutation has been identified frequently in cancers from colon, pancreas, lung, biliary tract and ovary.
To date, only 8 cases were diagnosed with KENS, molecularly characterized and their data are summarized in Table 1 [8-15]. Three males and 5 females were diagnosed with KENS and the age of presentation varied between newborn and 21 years. The epidermal nevus can be extensive, multiple epidermal nevi can be present or the nevus can be bounded by the ventral midline. The other clinical symptoms can differ between individuals and can potentially be very severe (brain abnormalities, benign and malignant tumours). Six different somatic mutations were identified in KENS with pathogenic mutations in the KRAS (c.35G > A), HRAS (c.34G > A, c.37G > C), FGFR3 (c.742C > T, c.746C > G) and PIK3CA (c.3140A > T) genes. The epidermal nevus was molecularly investigated in 7/8 cases resulting in the identification of the responsible mutation. Leucocytes are often tested, but the mutation is frequently absent. Data for other tissues are variable as well as the percentage of mosaicism.
KENS patients are still young when the first potential complications occur. Therefore, it is important that patients are diagnosed as early as possible to provide a better multidisciplinary follow up and therapy when needed. If patients are diagnosed with epidermal nevi and a pathogenic KRAS, PIK3CA or FGFR3 mutation, they should undergo further medical examination and potentially also further imaging (MRI) to identify the extent of disease. Mosaicism may delay diagnosis and complicate clinical management of such cases, as genetic confirmation of disease depends on appropriate tissue sampling.
Written informed consent was obtained from the patient for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor of this journal. The study was carried out in compliance with the Helsinki Declaration and in accordance with the ethical requirements for case reports of the ethical board Hamburg.
Applied biosystems instruments
- c.37G > C (p.Gly13Arg):
Nomenclature for the description of sequence variations
- C3, 5, 7:
Cervikal spinal segment 3, 5, 7
Congenital lipomatous overgrowth, Vascular malformations, Epidermal nevi, Scoliosis/skeletal and spinal anomalies
Catalogue of somatic mutations in cancer
Dual-energy X-ray absorptiometry
Epithelial membrane antigen
Formalin-fixed, paraffin-embedded tissue
Fibroblast growth factor 23
Fibroblast growth factor 3
Hematoxylin and eosin stain
HRas G-protein of the Ras subfamily
Keratinocytic epidermal nevus
Keratinocytic epidermal nevus syndrome
DNA sequencing primers
Magnetic resonance imaging
Phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
Thoracic spinal segment 1
T1/T2 relaxation time
- Vitamin D:
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The authors thank Ilse Van Der Heyden for technical assistance. Hilde Brems is a postdoctoral researcher of the Research Foundation Flanders (FWO) at the Catholic University of Leuven (KU Leuven). This research was supported by funding from the Belgian Science Policy Office Interuniversity Attraction Poles (BELSPO-IAP) programme through the project IAP P7/43-BeMGI.
The authors declare that they have no competing interests.
Study conception and design – SF, EL, HB. Acquisition, analysis and interpretation of data – SF, SH, CH, MS, CS. Drafting the manuscript or revising it critically for important intellectual content – SF, VFM, SH, EL, HB. Have given final approval of the version to be published – all authors. Agree to be accountable for all aspects of the work – all authors.
Said Farschtschi and Victor-Felix Mautner contributed equally to this work.
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Farschtschi, S., Mautner, VF., Hollants, S. et al. Keratinocytic epidermal nevus syndrome with Schwann cell proliferation, lipomatous tumour and mosaic KRAS mutation. BMC Med Genet 16, 6 (2015). https://doi.org/10.1186/s12881-015-0146-5
- Keratinocytic epidermal nevus syndrome
- Somatic mutation