|  |  |  |  |  | Stage 1 | Stage 2 | Stage 1 + Stage 2 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | SNP Marker | rs# | Gene symbol | Position | Allele 1/2 | Allele 1 frequency case | Allele 1 frequency control | p value of allele frequency | p value of genotype frequency | p value of Armitage trend testa) | Allele 1 frequency case | Allele 1 frequency control | p value of allele frequency | p value of genotype frequency | p value of Armitage trend testa) | Allele 1 frequency case | Allele 1 frequency control | p value of allele frequency | p value of genotype frequency | p value of Armitage trend testa) |
1 | SNP2248 | - | ATP8B4 | 48175632 | G/T | 0.23 | 0.31 | 0.00053 | 0.0024 | 0.00052 | 0.29 | 0.28 | 0.59 | 0.61 | 0.59 | 0.27 | 0.30 | 0.075 | 0.19 | 0.075 |
2 | SNP2372 | rs4261468 | RAB27A | 53342894 | A/G | 0.49 | 0.41 | 0.00091 | 0.0034 | 0.00078 | 0.47 | 0.48 | 0.67 | 0.80 | 0.66 | 0.48 | 0.45 | 0.076 | 0.20 | 0.072 |
3 | SNP3295 | rs12443171 | intergenic | 48225107 | C/T | 0.34 | 0.43 | 0.00091 | 0.0030 | 0.00099 | 0.38 | 0.40 | 0.49 | 0.66 | 0.49 | 0.37 | 0.41 | 0.0079 | 0.018 | 0.0081 |
4 | SNP3347 | rs1386166 | intergenic | 51376772 | A/G | 0.35 | 0.44 | 0.0014 | 0.0013 | 0.0016 | 0.37 | 0.40 | 0.15 | 0.23 | 0.16 | 0.36 | 0.42 | 0.0017 | 0.0080 | 0.0021 |
5 | SNP1439 | rs9972478 | RAB27A | 53347024 | A/C | 0.30 | 0.23 | 0.0017 | 0.0068 | 0.0016 | 0.27 | 0.29 | 0.28 | 0.34 | 0.27 | 0.28 | 0.26 | 0.25 | 0.37 | 0.25 |
6 | SNP3391 | rs2414351 | intergenic | 52746565 | C/G | 0.24 | 0.18 | 0.0019 | 0.0066 | 0.0017 | 0.19 | 0.21 | 0.16 | 0.39 | 0.17 | 0.21 | 0.20 | 0.34 | 0.64 | 0.35 |
7 | SNP2373 | rs2305424 | RAB27A | 53368640 | C/T | 0.47 | 0.55 | 0.0037 | 0.011 | 0.0032 | 0.48 | 0.48 | 0.97 | 0.86 | 0.96 | 0.48 | 0.51 | 0.061 | 0.11 | 0.058 |
8 | SNP1441 | rs2414409 | PIGB | 53419009 | C/T | 0.47 | 0.55 | 0.0039 | 0.013 | 0.0034 | 0.48 | 0.48 | 0.93 | 0.91 | 0.93 | 0.48 | 0.51 | 0.077 | 0.16 | 0.074 |
9 | SNP1280 | rs2278167 | SLC27A2 | 48285140 | G/T | 0.61 | 0.54 | 0.0050 | 0.014 | 0.0047 | 0.59 | 0.56 | 0.20 | 0.095 | 0.19 | 0.60 | 0.55 | 0.0054 | 0.013 | 0.0047 |
10 | SNP2039 | rs2412424 | FSIP1 | 37765425 | C/T | 0.65 | 0.59 | 0.0075 | 0.022 | 0.0061 | 0.62 | 0.62 | 0.91 | 0.62 | 0.91 | 0.64 | 0.61 | 0.072 | 0.16 | 0.067 |
11 | SNP2098 | rs4924524 | CHAC1 | 39042673 | C/T | 0.76 | 0.70 | 0.0060 | 0.022 | 0.0064 | 0.73 | 0.76 | 0.21 | 0.082 | 0.21 | 0.75 | 0.73 | 0.42 | 0.15 | 0.42 |
12 | SNP1440 | rs7183960 | PIGB | 53409987 | C/T | 0.47 | 0.54 | 0.0074 | 0.022 | 0.0067 | 0.48 | 0.48 | 0.80 | 0.93 | 0.79 | 0.48 | 0.50 | 0.13 | 0.26 | 0.13 |
13 | SNP2249 | rs11638841 | ATP8B4 | 48203899 | C/G | 0.73 | 0.66 | 0.0062 | 0.026 | 0.0069 | 0.67 | 0.68 | 0.72 | 0.89 | 0.72 | 0.70 | 0.67 | 0.15 | 0.33 | 0.15 |
14 | SNP3176 | rs996215 | intergenic | 44577114 | A/G | 0.23 | 0.30 | 0.0067 | 0.027 | 0.0073 | 0.28 | 0.27 | 0.51 | 0.74 | 0.50 | 0.26 | 0.28 | 0.22 | 0.46 | 0.22 |
15 | SNP2097 | rs4924523 | CHAC1 | 39042662 | A/T | 0.24 | 0.30 | 0.0072 | 0.025 | 0.0076 | 0.27 | 0.24 | 0.22 | 0.085 | 0.22 | 0.26 | 0.27 | 0.43 | 0.15 | 0.43 |
16 | SNP2072 | rs936216 | PAK6 | 38344560 | A/C | 0.75 | 0.81 | 0.0092 | 0.0075 | 0.0084 | 0.75 | 0.78 | 0.093 | 0.14 | 0.10 | 0.75 | 0.79 | 0.0032 | 0.015 | 0.0038 |
17 | SNP1438 | rs12910930 | RAB27A | 53332998 | C/G | 0.33 | 0.27 | 0.0095 | 0.016 | 0.0084 | 0.28 | 0.31 | 0.20 | 0.25 | 0.20 | 0.30 | 0.29 | 0.49 | 0.24 | 0.49 |
18 | SNP2041 | rs2254829 | FSIP1 | 37779957 | C/T | 0.66 | 0.59 | 0.0099 | 0.030 | 0.0085 | 0.63 | 0.62 | 0.84 | 0.67 | 0.84 | 0.64 | 0.61 | 0.071 | 0.17 | 0.068 |
19 | SNP1444 | rs3743203 | CCPG1 | 53436254 | C/T | 0.47 | 0.53 | 0.010 | 0.037 | 0.010 | 0.47 | 0.47 | 0.98 | 0.83 | 0.98 | 0.47 | 0.49 | 0.11 | 0.22 | 0.10 |
20 | SNP3096 | rs156787 | FLJ39531 | 37335619 | A/G | 0.18 | 0.23 | 0.0092 | 0.038 | 0.011 | 0.18 | 0.21 | 0.065 | 0.065 | 0.062 | 0.18 | 0.22 | 0.0020 | 0.0041 | 0.0022 |
* | SNP2140 | rs2412747 | UBR1 | 41074095 | C/T | 0.81 | 0.77 | 0.049 | 0.11 | 0.049 | 0.79 | 0.75 | 0.039 | 0.072 | 0.039 | 0.80 | 0.76 | 0.0043 | 0.0081 | 0.0045 |