Pooling analysis regarding the impact of human vitamin D receptor variants on the odds of psoriasis

Li, Juan; Sun, Li; Sun, Jinghui; Yan, Min

doi:10.1186/s12881-019-0896-6

BMC Medical Genetics

Table 1 Genotype distributions of included case-control studies

From: Pooling analysis regarding the impact of human vitamin D receptor variants on the odds of psoriasis

First author	Year	Ethnicity	case			polymorphism	Control			Source of controls	P _HWE	Genotyping method
First author	Year	Ethnicity	XX	XY	YY	polymorphism	XX	XY	YY	Source of controls	P _HWE	Genotyping method
Dayangac	2007	Caucasian	12	29	10	rs7975232	30	55	15	PB	0.21	PCR-RFLP
Kaya	2002	Caucasian	14	31	8	rs7975232	27	21	6	PB	0.54	PCR-RFLP
Lee	2002	Asian	5	28	22	rs7975232	3	29	72	PB	0.97	PCR-RFLP
Liu	2017	Asian	39	56	15	rs7975232	100	67	16	PB	0.33	LDR
Okita	2002	Asian	4	19	27	rs7975232	9	41	36	PB	0.59	PCR-RFLP
Park	1999	Asian	10	46	48	rs7975232	3	29	72	PB	0.97	PCR-RFLP
Richetta	2014	Caucasian	37	50	21	rs7975232	88	136	44	PB	0.48	Taqman assay
Rucevic	2012	Caucasian	48	99	33	rs7975232	110	193	63	PB	0.17	PCR-RFLP
Saeki	2002	Asian	9	46	60	rs7975232	10	26	33	PB	0.21	PCR-RFLP
Zhao	2015	Asian	159	148	17	rs7975232	92	54	12	PB	0.31	gene sequencing
Zhou	2014	Asian	182	130	30	rs7975232	209	113	19	HB	0.47	Multiplex SNapSHOT
Zhu	2002	Asian	22	30	60	rs7975232	8	48	52	PB	0.49	PCR-RFLP
Zuel	2011	African	23	24	3	rs7975232	18	30	2	PB	0.02	PCR-RFLP
Kaya	2002	Caucasian	10	25	18	rs1544410	11	22	21	PB	0.25	PCR-RFLP
Kontula	1997	Caucasian	2	12	5	rs1544410	10	29	36	PB	0.29	PCR-RFLP
Lee	2002	Asian	1	3	51	rs1544410	0	13	88	PB	0.49	PCR-RFLP
Liu	2017	Asian	97	11	2	rs1544410	163	18	2	PB	0.08	LDR
Mee	1998	Caucasian	78^a	106^a		rs1544410	114^a	134^a		NA	> 0.05	PCR-RFLP
Okita	2002	Asian	3	7	40	rs1544410	4	12	70	PB	0.00	PCR-RFLP
Richetta	2014	Caucasian	42	42	24	rs1544410	87	124	57	PB	0.30	Taqman assay
Rucevic	2012	Caucasian	19	94	67	rs1544410	68	175	123	PB	0.68	PCR-RFLP
Ruggiero	2004	Caucasian	17	28	15	rs1544410	18	32	18	PB	0.63	PCR-RFLP
Saeki	2002	Asian	4	12	99	rs1544410	8	10	51	PB	0.00	PCR-RFLP
Zhao	2015	Asian	306	17	1	rs1544410	142	16	0	PB	0.50	gene sequencing
Zhou	2014	Asian	311	29	2	rs1544410	321	19	1	HB	0.22	Multiplex SNapSHOT
Zhu	2002	Asian	0	36	76	rs1544410	0	16	92	PB	0.41	PCR-RFLP
Dayangac	2007	Caucasian	28	20	3	rs2228570	55	36	9	PB	0.39	PCR-RFLP
Halsall	2005	Caucasian	250^a	160^a		rs2228570	102^a	58^a		HB	> 0.05	PCR-RFLP
Kaya	2002	Caucasian	24	23	6	rs2228570	29	22	3	PB	0.66	PCR-RFLP
Liu	2017	Asian	25	61	24	rs2228570	50	97	36	PB	0.37	LDR
Richetta	2014	Caucasian	41	49	18	rs2228570	117	114	37	PB	0.28	Taqman assay
Saeki	2002	Asian	37	55	23	rs2228570	29	31	9	PB	0.87	PCR-RFLP
Zhao	2015	Asian	118	150	56	rs2228570	25	68	65	PB	0.31	gene sequencing
Zhou	2014	Asian	94	180	68	rs2228570	99	171	71	HB	0.86	Multiplex SNapSHOT
Acikbas	2012	Caucasian	14	47	41	rs731236	27	33	42	PB	< 0.05	PCR-RFLP
Dayangac	2007	Caucasian	26	23	2	rs731236	35	49	16	PB	0.87	PCR-RFLP
Halsall	2005	Caucasian	262^a	148^a		rs731236	90^a	70^a		HB	> 0.05	PCR-RFLP
Kaya	2002	Caucasian	19	25	9	rs731236	22	24	8	PB	0.73	PCR-RFLP
Liu	2017	Asian	101	9	0	rs731236	171	12	0	PB	0.65	LDR
Okita	2002	Asian	39	11	0	rs731236	72	14	0	PB	0.41	PCR-RFLP
Richetta	2014	Caucasian	42	44	22	rs731236	89	131	48	PB	0.99	Taqman assay
Rucevic	2012	Caucasian	79	82	19	rs731236	139	175	52	PB	0.80	PCR-RFLP
Saeki	2002	Asian	100	14	1	rs731236	51	16	2	PB	0.59	PCR-RFLP
Zhao	2015	Asian	283	37	4	rs731236	129	27	2	PB	0.67	gene sequencing
Zhou	2014	Asian	308	33	1	rs731236	315	26	0	HB	0.46	Multiplex SNapSHOT
Zuel	2011	African	16	25	9	rs731236	19	26	5	PB	0.36	PCR-RFLP

X major allele, Y minor allele, PB population-based controls, HB hospital-based controls, NA not available data, PCR-RFLP polymerase chain reaction-restriction fragment length polymorphism, P_HWE P-value of Hardy-Weinberg equilibrium, LDR ligase detection reactions
^a The frequency of major allele and minor allele

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