From: Novel potential causative genes in carotid paragangliomas
Gene | rs ID number | GenBank | Coordinate | Nucleotide change | Amino acid change | Genotype/number of samples | Predictions | |||
---|---|---|---|---|---|---|---|---|---|---|
SIFT | PolyPhen2 | MutationTaster | LRT | |||||||
CPS1 | – | – | Chr2: 211494571 | c.2706-7855G > A | – | Het/2 | N/A | N/A | N/A | N/A |
– | – | Chr2: 211494681 | c.2706-7745C > G | – | Het/1 | N/A | N/A | N/A | N/A | |
– | – | Chr2: 211494618 | c.2706-7798delA | – | Het/1 | N/A | N/A | N/A | N/A | |
– | NM_001122633.2 | Chr2: 211539650 | c.4144G > A | p.Gly1382Ser | Het/2 | Tolerated | Benign | Disease-causing | Deleterious | |
MYH15 | rs56118396 | NM_014981.1 | Chr3: 108112954 | c.5243G > A | p.Arg1748Gln | Het/4 | Tolerated | Benign | Disease-causing | N/A |
– | Chr3: 108110666 | c.5431G > A | p.Glu1811Lys | Het/1 | Deleterious | Probably damaging | Disease-causing | N/A | ||
MYH3 | rs34088014 | NM_002470.3 | Chr17: 10542709 | c.3008C > T | p.Ala1003Val | Het/2 | Tolerated | Benign | Disease-causing | N/A |
rs61735358 | Chr17: 10541497 | c.3592G > A | p.Ala1198Thr | Het/1 | Tolerated | Possibly damaging | Disease-causing | N/A | ||
rs201488879 | Chr17: 10535939 | c.4810G > A | p.Ala1604Thr | Het/1 | Deleterious | Possibly damaging | Disease-causing | N/A | ||
rs34393601 | Chr17: 10534960 | c.5254G > A | p.Ala1752Thr | Het/3 | Deleterious | Possibly damaging | Disease-causing | N/A | ||
rs763347751 | Chr17: 10550688 | c.791 T > C | p.Ile264Thr | Het/1 | Deleterious | Probably damaging | Disease-causing | N/A | ||
rs746986821 | Chr17: 10543684 | c.2392A > G | p.Met798Val | Het/1 | Deleterious | Benign | Possibly disease-causing | N/A | ||
rs551363957 | Chr17: 10541370 | c.3719C > T | p.Ser1240Leu | Het/1 | Deleterious | Benign | Disease-causing | N/A | ||
rs769788909 | Chr17: 10547753 | c.1325C > T | p.Thr442Ile | Het/1 | Tolerated | Benign | Possibly disease-causing | N/A |