Region | Squared correlation (r2) of minor allele frequency | Squared correlation (r2) p-value from chi-square | ||
---|---|---|---|---|
Before post-imputation QC | After post-imputation QC | Before post-imputation QC | After post-imputation QC | |
Coding region | 0.868 | 0.997 | 0.387 | 0.813 |
Complex region | 0.817 | 0.991 | 0.267 | 0.782 |
Intergenic region | 0.864 | 0.996 | 0.328 | 0.789 |
Intron region | 0.863 | 0.995 | 0.340 | 0.784 |
UTR region | 0.830 | 0.991 | 0.303 | 0.756 |