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Table 3 Comparison of allele frequencies of the 15 variants between cases and controls

From: Association study of candidate genes for susceptibility to Kashin-Beck disease in a Tibetan population

Gene

SNP

Region/Change

Minor_allele

P_allele

MAF

Case/Control

P_HWE

Case/Control

OR

(95% CI)

A2BP1

rs716508

intron

C

0.075

0.222/0.304

0.299/0.797

0.651 (0.405–1.046)

ADAM12

rs3740199

p.Gly48Arg

C

0.381

0.431/0.478

0.344/0.582

0.829 (0.545–1.262)

rs1044122

synonymous

C

0.313

0.392/0.341

0.51/0.502

1.248 (0.811–1.92)

rs1871054

intron

C

0.807

0.443/0.456

0.579/0.381

0.949 (0.626–1.44)

ASPN

rs7033979

intron

G

8 × 10−3

0.157/0.200

0.044/0.048

0.744 (0.597–0.927)

BTNL2

rs10947262

p.Ser188Leu

T

0.925

0.280/0.275

0.691/0.262

1.025 (0.611–1.719)

COG5

rs3757713

intron

G

0.499

0.191/0.22

0.606/0.111

0.838 (0.502–1.399)

DUS4L

rs4730250

intron

G

0.289

0.179/0.227

0.693/0.113

0.746 (0.434–1.284)

FRZB

rs7775

p.Arg324Gly

G

4 × 10−3

0.083/0.055

0.330/0.808

1.568 (1.151–2.136)

HLA

rs7775228

-

C

0.321

0.253/0.209

0.861/0.539

1.282 (0.784–2.097)

IL1B

rs1143634

synonymous

T

0.931

0.041/0.039

0.694/0.015

1.048 (0.36–3.054)

rs1143633

intron

G

0.744

0.483/0.500

0.199/0.292

0.933 (0.614–1.417)

RHOB

rs585017

upstream

G

0.098

0.022/0.055

0.831/0.143

0.382 (0.118–1.242)

SMAD3

rs12901499

intron

G

0.412

0.344/0.386

0.278/0.455

0.836 (0.545–1.282)

TXNDC3

rs4720262

utr-5

T

0.668

0.118/0.133

0.196/0.231

0.875 (0.474–1.614)

  1. SNP single-nucleotide polymorphism, P_allele the association P value for minor allele, MAF Minor Allele Frequency, P_HWE the P value of Hardy-Weinberg equilibrium (HWE), OR odds ratio for the effect allele, 95% CI 95% confidence interval