From: SNP selection for genes of iron metabolism in a study of genetic modifiers of hemochromatosis
Gene | NHLBI reseq total SNPs | NHLBI tagSNPs MAF≥3% r2 0.8 | Region included in basepairs | Affy 100K | Affy 500K | Affy GW5 | Affy GW6 | Illumina Humhap 300 | Illumina Humhap 550 | Illumina Human 1M |
---|---|---|---|---|---|---|---|---|---|---|
ACO1 | 276 | 26 | 69937 | 1 | 11 | 12 | 24 | 14 | 26 | 41 |
CYBRD1 | 139 | 16 | 39535 | 0 | 3 | 3 | 8 | 7 | 12 | 19 |
FLVCR | 185 | 17 | 40442 | 4 | 6 | 6 | 15 | 11 | 12 | 18 |
HAMP | 43 | 4 | 6314 | 0 | 2 | 2 | 3 | 1 | 1 | 4 |
HCP1 | 65 | 3 | 11169 | 0 | 0 | 0 | 0 | 1 | 2 | 7 |
HEPH | 177 | 13 | 101478 | 1 | 11 | 10 | 32 | 5 | 7 | 21 |
HFE2 | 38 | 5 | 7437 | 0 | 1 | 1 | 2 | 0 | 1 | 5 |
IREB2 | 241 | 11 | 64450 | 1 | 15 | 11 | 21 | 3 | 7 | 24 |
PGRMC1 | 33 | 5 | 12051 | 0 | 0 | 0 | 1 | 1 | 1 | 7 |
PGRMC2 | 55 | 2 | 21640 | 0 | 1 | 1 | 4 | 2 | 3 | 9 |
TF | 158 | 20 | 33189 | 0 | 23 | 18 | 37 | 8 | 11 | 23 |
TFR2 | 56 | 4 | 21649 | 0 | 0 | 0 | 1 | 3 | 3 | 13 |
TFRC | 314 | 36 | 36402 | 2 | 4 | 4 | 10 | 7 | 8 | 14 |