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Table 2 Summary of single nucleotide polymorphisms and allele frequencies

From: Aryl hydrocarbon receptor nuclear translocator (ARNT) gene as a positional and functional candidate for type 2 diabetes and prediabetic intermediate traits: Mutation detection, case-control studies, and gene expression analysis

Position RS Number Genome Location Variant Gene Location Caucasian Case/Control Frequency African – American Case/Control Frequency
-992 rs7517566 149116659 C/T 5' Flanking ND1 0.138/0.17
7377 rs11204735 149108291 G/A Intron 1 0.432/0.448 0.164/0.1693
32158 rs2134688 149083510 T/C Intron 4 0.087/0.086 NP
34242 rs10305679 149081426 T/C Intron 5 NP 0.194/0.221
38039 rs10305685 149077629 A/G Intron 6 NP 0.158/0.201
39928 rs10305695 149075740 G/A Intron 6 0.032/0.041 NP
40155 rs2228099 149075513 G/C Exon 7 (Val to Val) ND2 ND2
46017 rs10305710 149069651 G/A Intron 10 0.041/0.059 NP
47578 rs3738483 149068090 G/A Intron 12 ND1 0.322/0.348
48389 rs10305714 149067279 T/C Intron 12 0.324/0.344 0.265/0.232
49289 rs1889740 149066379 G/A Intron 12 0.345/0.363 0.481/0.466
50312 rs10305718 149065356 C/G Intron 13 NP 0.189/0.173
53679 rs10305724 149061989 C/T Intron 14 0.061/0.041 NP
56428 rs11589458 149059240 T/C Intron 14 ND 0.22/0.192
65586 rs10305751 149050082 G/A 3'UTR < 0.05 0.124/0.133
66247 rs10847 149049421 G/A 3'UTR 0.28/0.319 < 0.05
68462 rs4379678 149047206 A/G 3' Flanking/Intron 1 of CTSK 0.087/0.085 NP
  1. Position is given relative to the A of the ATG start site. Genome location is based on the March 2006 (hg18) build. Variant is given for the negative (coding) strand as major/minor allele in Caucasian samples. Frequencies are given for the minor allele in Caucasian and African American samples. NP, not polymorphic in HapMap dataset; ND, not done. 1 r2 = 1 with rs2134688; 2, r2 = 1 with rs1889740; 3 minor allele is "G" in African Americans.