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Table 4 Haplotype analysis of the association between MAPT and Creutzfeldt-Jakob disease

From: No evidence for association between taugene haplotypic variants and susceptibility to Creutzfeldt-Jakob disease

Haplotype

Alleles

Frequency

P-value

Frequency

P-value

 

rs242559

rs242557

rs3785883

rs2471738

H1/H2

rs7521

Controls

sCJD

 

UK sCJD

UK vCJD

 

H1e

A

G

G

C

G

A

0.25

0.26

ref

0.24

0.2

0.51

H2a

C

G

G

C

A

G

0.23

0.22

0.64

0.28

0.31

ref

H1c

A

A

G

T

G

G

0.12

0.15

0.46

0.16

0.1

0.4

H1d

A

A

G

C

G

A

0.13

0.1

0.08

0.07

0.16

0.18

H1f

A

G

A

C

G

G

0.05

0.05

0.88

0.08

0.02

0.04

H1g

A

A

G

C

G

G

0.05

0.05

0.91

_

_

_

H1h

A

G

A

C

G

A

0.04

0.04

0.64

_

_

_

H1i

A

A

A

C

G

A

0.03

0.03

0.68

_

_

_

H1j

A

A

A

T

G

G

0.03

0.02

0.45

0.01

0.07

0.01

H1b

A

G

G

C

G

G

0.02

0.02

0.55

_

_

_

  1. P-values are not corrected for multiple testing
  2. Included all haplotypes present in both sCJD and vCJD
  3. sCJD: sporadic Creutzfeldt Jakob disease
  4. vCJD:variant Creutzfeldt Jakob disease