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Table 4 Genotype and allele frequencies of SNPs in CD44 gene observed in 105 control subjects and 101 patients

From: A whole genome SNP genotyping by DNA microarray and candidate gene association study for kidney stone disease

SNP ID

Genotype

Genotype frequency (%)

OR (95% CI)

P-value*

Allele

Allele frequency (%)

OR (95% CI)

P-value*

Control

Patient

Control

Patient

rs353623

C/C

69.2

83.2

1.00

0.018

C

81.2

90.6

1.00

0.0066

C/T, T/T

30.8

16.8

0.46 (0.23-0.89)

T

18.8

9.4

0.45 (0.25-0.81)

rs353618

A/A

69.5

83.2

1.00

0.021

A

81.4

90.6

1.00

0.0075

A/G, G/G

30.5

16.8

0.46 (0.24-0.90)

G

18.6

9.4

0.45 (0.25-0.82)

rs353612

C/C

86.7

95

1.00

0.034

C

92.9

97.5

1.00

0.0275

C/T, T/T

13.3

5

0.34 (0.12-0.98)

T

7.1

2.5

0.33 (0.12-0.92)

rs353637

T/T

87.1

96

1.00

0.022

T

93.6

98

1.00

0.0286

T/A

12.9

4

0.29 (0.09-0.91)

A

6.4

2

0.30 (0.10-0.94)

rs353630

G/G

86.7

95

1.00

0.034

G

93.3

97.5

1.00

0.0426

G/A

13.3

5

0.34 (0.12-0.98)

A

6.7

2.5

0.35 (0.13-1.00)

rs353647

G/G

50.5

70.3

1.00

0.0035

G

71.4

83.7

1.00

0.0030

G/C, C/C

49.5

29.7

0.43 (0.24-0.76)

C

28.6

16.3

0.49 (0.30-0.79)

rs3794110

C/C

74

87

1.00

0.019

C

87

93

1.00

0.0446

C/T, T/T

26

13

0.43 (0.21-0.88)

T

13

7

0.50 (0.26-0.99)

rs3794109

A/A

74.3

87.1

1.00

0.019

A

87.1

93.1

1.00

0.0446

A/G, G/G

25.7

12.9

0.43 (0.21-0.88)

G

12.9

6.9

0.50 (0.26-0.99)

rs112762

C/C

42.9

58.4

1.00

0.025

C

65.2

76.7

1.00

0.0103

C/T, T/T

57.1

41.6

0.53 (0.31-0.93)

T

34.8

23.3

0.57 (0.37-0.88)

rs10488809

T/T

75.2

87.1

1.00

0.028

T

87.6

93.1

1.00

0.0618

T/A, A/A

24.8

12.9

0.45 (0.22-0.93)

A

12.4

6.9

0.53 (0.27-1.04)

rs3794105

G/G

86.7

95

1.00

0.034

G

93.3

97.5

1.00

0.0426

G/A

13.3

5

0.34 (0.12-0.98)

A

6.7

2.5

0.35 (0.13-1.00)

rs7110737

T/T

36.2

43.6

1.00

0.28

T

58.1

67.8

1.00

0.0411

T/A, A/A

63.8

56.4

0.73 (0.42-1.29)

A

41.9

32.2

0.66 (0.44-0.98)

rs7116432

C/C

43

55.2

1.00

0.087

C

65

74.5

1.00

0.0413

C/T, T/T

57

44.8

0.61 (0.35-1.08)

T

35

25.5

0.64 (0.41-0.98)

  1. OR, odds ratio; CI, confidence interval.
  2. *Uncorrected P-value.
  3. Significant P-values are indicated in bold.