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Table 1 Sequence of primers and the concentration for the genotyping of the polymorphism of BIN1 , CLU , ABCA7 , CR1 and PICALM

From: Allele-specific polymerase chain reaction for the detection of Alzheimer’s disease-related single nucleotide polymorphisms

Gene

SNP ID

Primer name

Sequence (5’-3’)

Concentration of primer in AS-PCR (μM)

BIN1

rs744373

BIN1-Fc

AAG ACG GAG AGA GGA GGC AT

0.4

BIN1-Rc

CCA TCT TCT TCT GCT CTC CCA G

0.1

BIN1-Fas-W

CAT GGG CAG CCT CTG AGA

0.1

BIN1-Ras-V

AGG CAG GTC TGA GGC C

0.1

CLU

rs11136000

CLU-Fc

CCT GGC TTA AAG AAT CCA CTC ATC

0.1

CLU-Rc

CAG GGG ATT CCT TTG AGA TAG AGT

0.1

CLU-Fas-W

GCA AGG GCC CGT TAG AGA A

0.1

CLU-Ras-V

CAA AGC CAC ACC AGC TAT CAA AAC

0.1

ABCA7

rs3764650

ABCA7-Fc

AAA ATT AGC CAG GCG ACT TGG

0.05

ABCA7-Rc

TCA GTG TCA CGG AGT AGA TCC

0.05

ABCA7-Fas-W

GCT GCG AAC TTT GCA CCT

0.05

ABCA7-Fas-V

GCT GCG AAC TTT GCA CCG

0.05

CR1

rs3818361

CR1-Fc

TGC TCC ATA ACC AGT AGT TGA A

0.1

CR1-Rc

CAC TCA CCC TTC ATC GCA AA

0.1

CR1-Ras-W

TGG GGC AAT TTC CTT TGC

0.4

CR1-Fas-V

CCT CTG GTA AGC ATA AGA TAT AA

0.4

PICALM

rs3851179

PICALM-Fc

TCT ATT TTC TGC CTT ACT GTC

0.04

PICALM-Rc

GCT GTT CAG TAA ATC TGA ATT TCT

0.04

PICALM-Ras-W

CCA TAT AAT AGT TGT GAT AGA TAA C

0.3

PICALM-Fas-V

CAA ACA ATA CAC ACT TCA GTA AAT A

0.04

  1. The specific nucleotides at the 3’-end of primers were underlined.