Allele† | Genotype counts (11/12/22) | Minor allele freq | Association test (best result)‡ | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
SNP* | Location* | 1 | 2 | Controls | Cases | Controls | Cases | P asym | Model | P emp | |
Follow-up study (Sample Set 2) | |||||||||||
rs220168 | S47 | Intron | A | G | 220/138/22 | 179/712/12 | 0.2395 | 0.1813 | 0.0074 | Dominant | 0.0568 |
rs220170 | S48 | Intron | C | T | 228/120/22 | 178/70/15 | 0.2216 | 0.1901 | 0.1173 | Dominant | 0.5556 |
rs11911271 | S49 | Intron | T | C | 205/157/27 | 138/117/14 | 0.2712 | 0.2695 | 0.7241 | Dominant | 0.9536 |
rs3819142 | S54 | Exon (ns) | A | C | 215/149/20 | 182/76/10 | 0.2461 | 0.1791 | 0.0021 | Dominant | 0.0168 |
Combined analysis (Sample Sets 1 and 2) | |||||||||||
rs220168 | S47 | Intron | A | G | 436/251/43 | 291/149/24 | 0.2308 | 0.2123 | 0.2883 | Allelic | 0.8884 |
rs220170 | S48 | Intron | C | T | 439/243/41 | 294/145/27 | 0.2248 | 0.2135 | 0.4118 | Dominant | 0.9691 |
rs11911271 | S49 | Intron | T | C | 380/305/54 | 256/183/32 | 0.2794 | 0.2622 | 0.3194 | Dominant | 0.9242 |
rs3819142 | S54 | Exon (ns) | A | C | 420/279/39 | 294/154/23 | 0.2419 | 0.2123 | 0.0574 | Dominant | 0.3303 |