Allele† | Genotype counts (11/12/22) | Minor allele freq | Association test (best result)‡ | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
SNP* | Location* | 1 | 2 | Controls | Cases | Controls | Cases | P asym | Model | P emp | |
rs220260 | S1 | Intergenic | C | G | 149/157/44 | 155/160/36 | 0.3500 | 0.3343 | 0.3630 | Recessive | 1 |
rs220262 | S2 | Intergenic | A | T | 174/148/29 | 173/157/22 | 0.2934 | 0.2855 | 0.3038 | Recessive | 1 |
rs220263 | S3 | Intergenic | A | G | 106/159/83 | 85/179/86 | 0.4670 | 0.4986 | 0.0673 | Dominant | 0.9882 |
rs220265 | S4 | Intergenic | C | A | 127/155/62 | 106/181/65 | 0.4055 | 0.4418 | 0.0572 | Dominant | 0.9763 |
rs12627387 | S5 | Intergenic | G | A | 100/166/86 | 104/184/66 | 0.4801 | 0.4463 | 0.0614 | Recessive | 0.9829 |
rs13340012 | S6 | Intergenic | A | C | 211/117/22 | 201/134/14 | 0.2300 | 0.2321 | 0.1738 | Recessive | 1 |
rs220271 | S7 | Intron | C | T | 128/164/61 | 135/175/45 | 0.4051 | 0.3732 | 0.0860 | Recessive | 0.9955 |
rs220276 | S8 | Intron | G | A | 118/168/66 | 129/168/52 | 0.4261 | 0.3897 | 0.1650 | Allelic | 1 |
rs220278 | S9 | Intron | G | A | 143/157/53 | 159/153/42 | 0.3725 | 0.3347 | 0.1374 | Allelic | 0.9997 |
rs220281 | S10 | Intron | G | A | 157/151/44 | 149/169/38 | 0.3395 | 0.3441 | 0.4408 | Genotypic | 1 |
rs220282 | S11 | Intron | G | A | 139/160/55 | 126/160/64 | 0.3814 | 0.4114 | 0.2487 | Allelic | 1 |
rs220285 | S12 | Intron | C | G | 252/69/11 | 269/78/7 | 0.1370 | 0.1299 | 0.2740 | Recessive | 1 |
rs220298 | S13 | Intron | G | A | 156/159/39 | 181/144/31 | 0.3347 | 0.2893 | 0.0647 | Allelic | 0.9867 |
rs220299 | S14 | Intron | T | C | 156/152/46 | 141/168/43 | 0.3446 | 0.3608 | 0.2804 | Dominant | 1 |
rs8133951 | S15 | Intron | G | A | 126/151/51 | 135/159/48 | 0.3857 | 0.3728 | 0.5810 | Recessive | 1 |
rs749020 | S16 | Intron | G | A | 112/166/76 | 112/166/75 | 0.4492 | 0.4476 | 0.9425 | Recessive | 1 |
rs220301 | S17 | Intron | G | C | 136/156/60 | 134/166/50 | 0.3920 | 0.3800 | 0.3145 | Recessive | 1 |
rs2839466 | S18 | Intron | G | A | 136/165/48 | 147/160/43 | 0.3739 | 0.3514 | 0.3803 | Additive | 1 |
rs220308 | S19 | Intron | T | G | 105/169/80 | 111/168/74 | 0.4647 | 0.4476 | 0.5187 | Allelic | 1 |
rs220109 | S20 | Exon (syn) | C | T | 112/153/83 | 114/167/72 | 0.4583 | 0.4405 | 0.2706 | Recessive | 1 |
rs220110 | S21 | Intron | C | A | 159/141/52 | 149/154/46 | 0.3480 | 0.3524 | 0.5088 | Dominant | 1 |
rs12626854 | S22 | Intron | T | C | 156/156/41 | 149/156/40 | 0.3371 | 0.3420 | 0.7891 | Dominant | 1 |
rs220120 | S23 | Intron | G | C | 165/150/37 | 180/136/34 | 0.3182 | 0.2914 | 0.2276 | Dominant | 1 |
rs220131 | S24 | Intron | C | T | 86/177/79 | 97/171/83 | 0.4898 | 0.4801 | 0.4574 | Dominant | 1 |
rs220136 | S25 | Intron | C | A | 90/185/76 | 92/169/87 | 0.4801 | 0.4928 | 0.2953 | Recessive | 1 |
rs11701944 | S26 | Intron | A | G | 144/152/48 | 133/169/46 | 0.3605 | 0.3750 | 0.3282 | Dominant | 1 |
rs220140 | S27 | Intron | C | G | 161/156/38 | 164/161/31 | 0.3268 | 0.3132 | 0.3686 | Recessive | 1 |
rs220143 | S28 | Intron | G | A | 177/140/35 | 183/143/23 | 0.2983 | 0.2708 | 0.1071 | Recessive | 0.9990 |
rs2839468 | S29 | Intron | A | C | 111/161/82 | 100/179/72 | 0.4590 | 0.4601 | 0.3391 | Genotypic | 1 |
rs220145 | S30 | Intron | G | A | 224/105/18 | 204/135/17 | 0.2032 | 0.2374 | 0.0489 | Dominant | 0.9569 |
rs13047454 | S31 | Intron | A | G | 183/138/34 | 175/160/19 | 0.2901 | 0.2797 | 0.0331 | Recessive | 0.8971 |
rs220148 | S32 | Intron | A | C | 167/146/39 | 182/140/28 | 0.3182 | 0.2800 | 0.1182 | Allelic | 0.9995 |
rs220149 | S33 | Intron | T | G | 96/165/86 | 96/185/71 | 0.4856 | 0.4645 | 0.1439 | Recessive | 0.9999 |
rs220153 | S34 | Intron | G | A | 212/108/27 | 199/125/23 | 0.2334 | 0.2464 | 0.3153 | Dominant | 1 |
rs220154 | S35 | Intron | C | T | 109/163/77 | 109/178/64 | 0.4542 | 0.4359 | 0.2066 | Recessive | 1 |
rs220155 | S36 | Intron | C | T | 136/144/58 | 125/162/55 | 0.3846 | 0.3977 | 0.3229 | Dominant | 1 |
rs11910495 | S37 | Intron | A | G | 256/90/8 | 250/92/9 | 0.1497 | 0.1567 | 0.7161 | Allelic | 1 |
rs13051533 | S38 | Intron | G | A | 169/136/40 | 163/147/34 | 0.3130 | 0.3125 | 0.4684 | Recessive | 1 |
rs220157 | S39 | Intron | C | T | 126/156/64 | 121/175/47 | 0.4104 | 0.3921 | 0.0870 | Recessive | 0.9957 |
rs9984766 | S40 | Intron | G | A | 226/86/21 | 204/98/16 | 0.1922 | 0.2044 | 0.3168 | Dominant | 1 |
rs220158 | S41 | Exon (syn) | C | T | 214/117/23 | 225/104/24 | 0.2302 | 0.2153 | 0.3677 | Dominant | 1 |
rs220159 | S42 | Exon (ns) | G | A | 136/153/64 | 120/177/54 | 0.3980 | 0.4060 | 0.1664 | Genotypic | 1 |
rs2839470 | S43 | Intron | C | T | 123/163/57 | 125/168/55 | 0.4038 | 0.3994 | 0.7717 | Recessive | 1 |
rs4920063 | S44 | Intron | G | A | 155/139/47 | 133/184/36 | 0.3416 | 0.3626 | 0.0100 | Genotypic | 0.9219 |
rs220161 | S45 | Intron | C | G | 92/158/83 | 106/171/67 | 0.4865 | 0.4433 | 0.0879 | Recessive | 0.9963 |
rs2839471 | S46 | Intron | T | C | 98/178/76 | 97/187/70 | 0.4688 | 0.4619 | 0.5512 | Recessive | 1 |
rs220168 | S47 | Intron | A | G | 217/113/21 | 198/132/21 | 0.2208 | 0.2479 | 0.1447 | Dominant | 0.9999 |
rs220170 | S48 | Intron | C | T | 212/123/19 | 199/130/23 | 0.2274 | 0.2500 | 0.3192 | Allelic | 1 |
rs11911271 | S49 | Intron | T | C | 176/148/27 | 201/122/31 | 0.2877 | 0.2599 | 0.0773 | Dominant | 0.9929 |
rs220171 | S50 | Intron | C | T | 158/163/30 | 185/137/30 | 0.3177 | 0.2798 | 0.0455 | Dominant | 0.9477 |
rs220172 | S51 | Intron | G | A | 171/137/34 | 160/139/35 | 0.2997 | 0.3129 | 0.5858 | Dominant | 1 |
rs220173 | S52 | Intron | C | G | 88/183/84 | 97/180/79 | 0.4944 | 0.4747 | 0.4535 | Additive | 1 |
rs3819141 | S53 | Exon (syn) | T | A | 128/163/62 | 120/160/73 | 0.4065 | 0.4334 | 0.2925 | Recessive | 1 |
rs3819142 | S54 | Exon (ns) | A | C | 206/130/19 | 206/130/19 | 0.2366 | 0.2514 | 0.5125 | Additive | 1 |
rs220179 | S55 | Intron | C | T | 175/146/27 | 175/146/27 | 0.2874 | 0.2963 | 0.7097 | Additive | 1 |
rs915840 | S56 | Intron | T | C | 212/122/21 | 212/122/21 | 0.2310 | 0.2486 | 0.3025 | Dominant | 1 |
rs220181 | S57 | Intron | G | A | 183/140/15 | 183/140/15 | 0.2515 | 0.2536 | 0.2039 | Recessive | 1 |