Table 1 The eight transcript SNPs studied in this report
From: Allelic expression analysis of the osteoarthritis susceptibility locus that maps to MICAL3
SNP | Position on chr. 22 on NCBI genome build 37.3 | Alleles | MAF* | Gene | Location of SNP in gene | Pairwise linkage disequilibrium relative to the OA associated SNP rs2277831 | |
|---|---|---|---|---|---|---|---|
D' | r2 | ||||||
rs4488761 | 18209613 | A/G | 0.46 | BCL2L13 | 3'UTR/exonic^ | 0.11 | 0.00 |
rs2587100 | 18210704 | C/G | 0.40 | BCL2L13 | 3'UTR | 0.02 | 0.00 |
rs9967 | 18211205 | C/T | 0.38 | BCL2L13 | 3'UTR | 0.21 | 0.01 |
rs11538 | 18220831 | T/C | 0.18 | BID | 3'UTR/exonic^ | 0.12 | 0.00 |
rs5992854 | 18300240 | T/C | 0.32 | MICAL3 | exonic | 1.00 | 0.71 |
rs11917 | 18343011 | G/T | 0.41 | MICAL3 | 3'UTR | 0.76 | 0.11 |
rs1057721 | 18343843 | G/A | 0.41 | MICAL3 | 3'UTR | 0.78 | 0.13 |
rs4819639 | 18347127 | C/T | 0.29 | MICAL3 | 3'UTR | 0.74 | 0.06 |