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Table 1 Studied SNPs

From: The dopamine β-hydroxylase -1021C/T polymorphism is associated with the risk of Alzheimer's disease in the Epistasis Project

Gene

SNP

 

Minor allele frequency in controls

Linkage disequilibrium in controls

   

North Europe

North Spain

Difference (p)

With

North Europe

North Spain

       

D'

r 2

D'

r 2

DBH

rs1611115

-1021C/T

20.7% (T)

19.7% (T)

0.47

rs5320

0.994

0.015

0.994

0.017

 

rs 5320

Exon 3

Ala197Thr

5.3% (A, Thr)

6.0% (A, Thr)

0.38

rs1611131

0.257

0.002

0.393

0.003

 

rs1611131

Intron 10

A/G

29.4% (G)

24.5% (G)

0.002

rs1611115

0.295

0.055

0.250

0.047

IL1A

rs1800587

-889C/T

29.2% (T)

25.4% (T)

0.01

rs17561

0.999

0.994

0.989

0.971

 

rs17561

Exon 5

Ala114Ser

29.2% (T, Ser)

25.6% (T, Ser)

0.02

rs3783550

0.997

0.185

0.999

0.145

 

rs3783550

Intron 6

A/C

31.2% (C)

29.8% (C)

0.39

rs1800587

0.994

0.185

0.999

0.144

IL6

rs1800795

-174G/C

41.1% (C)

32.8% (C)

4 × 10 -7

rs2069837

0.999

0.055

0.998

0.049

 

rs2069837

Intron 2

A/G

7.3% (G)

9.3% (G)

0.03

     
  1. SNP = single nucleotide polymorphism, DBH = dopamine β-hydroxylase, IL1A = interleukin-lα, IL6 = interleukin-6, D' = ratio of observed linkage disequilibrium to maximum possible linkage disequilibrium, r 2 = correlation coefficient.
  2. Results in bold are significant at p < 0.05.