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Table 8 Large CNVs in the Croatia dataset: CNVs longer than 500 Kb in Croatia Controls.

From: Population-based study of genetic variation in individuals with autism spectrum disorders from Croatia

Chromosomal Region (Cytogenetic Coordinate) Copy No. Length (Kb) No. SNPs Start SNP End SNP Genes Individual Sex Age
chr2:836164-1827317 (2p25.3) 3 991 202 rs4533500 rs11127313 LOC391343, MYT1L, PXDN, SNTG2, TPO Aut_26 m 28
chr3:186745-1313259 (3p26.3) 3 1,127 339 rs6442427 rs1353825 CHL1, CNTN6 Aut_46 f 36
chr3:57010-1122201 (3p26.3) 3 1,065 267 rs1516321 rs6797539 CHL1, CNTN6 Aut_99 m 14
chr4:188763338-190322725 (4q35.2) 1 1,559 333 rs13147499 rs13106777 FLJ25801, TRIML1, ZFP42 Aut_37 m 27
chr4:190385789-190982886 (4q35.2) 3 597 69 rs10446846 rs6844114 TRIML1 (1080146 upstream); FRG1 (116082 downstream) Aut_141 m 20
chr5:104486852-105008254 (5q21.2-21.3) 3 521 58 rs294152 rs6872786 NUDT12 (1560463 upstream); EFNA5 (1735996 downstream) Aut_36 f 29
chr7:49000866-49879997 (7p12.3-12.2) 3 879 165 rs1004168 rs6963083 VWC2 Aut_203 f 20
chr7:79347222-81014740 (7q21.11) 1 1,668 336 rs6949571 rs2909580 CD36, GNAI1, GNAT3, SEMA3C Aut_65 m 8
chr8:4005541-4886423 (8p23.2) 1 881 781 rs7006672 rs7815159 CSMD1 Aut_38 f 25
chr8:85925158-87860757 (8q21.2-21.3) 1 1,936 257 rs4740033 rs11781187 ATP6V0D2, C8orf59, CA1, CA13, CA2, CA3, CNGB3, CPNE3, E2F5, FAM82B, LRRCC1, PSKH2, RALYL, REXO1L1, SLC7A13, WWP1 Aut_114 f 29
chr9:22934927-23536461 (9p21.3) 3 602 136 rs1463014 rs7028484 DMRTA1 (492455 upstream); ELAVL2 (143644 downstream) Aut_54 m 27
chr12:33415349-34701470 (12p11.1) 4 1,286 104 rs1905414 rs9706509 ALG10, SYT10 Aut_39 m 23
chr15:70783089-73316235 (15q24.1-24.2) 3 2,533 382 rs11072382 rs1565496 ADPGK, ARID3B, BBS4, C15orf17, C15orf39, CCDC33, CD276, CLK3, COX5A, CPLX3, CSK, CYP11A1, CYP1A1, CYP1A2, EDC3, GOLGA6, HCN4, ISLR, ISLR2, LMAN1L, LOC283677, LOC388135, LOXL1, MPI, NEO1, NPTN, PML, PPCDC, RPP25, SCAMP2, SCAMP5, SEMA7A, STOML1, STRA6, TBC1D21, UBL7, ULK3 Aut_10 m 48
chr16:76525505-77164850 (16q23.1) 3 639 235 rs387138 rs2346008 CLEC3A, KIAA1576, WWOX Aut_148 m 38
chr22:17690812-18613429 (22q11.21) 3 923 248 rs982520 rs854971 ARVCF, C22orf25, C22orf29, CDC45L, CLDN5, COMT, DGCR8, GNB1L, GP1BB, HIRA, HTF9C, LOC128977, MRPL40, RANBP1, RTN4R, SEPT5, TBX1, TXNRD2, UFD1L, ZDHHC8 Aut_94 m 6
chr22:19102598-19665559 (22q11.21) 3 563 97 rs738089 rs7292968 AIFM3, CRKL, KLHL22, MED15, PI4KA, SCARF2, SERPIND1, SNAP29 Aut_94 m 6
chrX:6468166-8112188 (Xp22.31) 3 1,644 190 rs6654819 rs2278935 HDHD1A, PNPLA4, STS, VCX, VCX2 Aut_157 f 41
chrX:93063380-93732495 (Xq21.32-21.33) 0 669 88 rs6615574 rs5950049 FAM133A (209463 upstream); DIAPH2 (2093870 downstream) Aut_155 m 38