Table 1 Type 2 diabetes and obesity SNPs/genes we investigated for association with SGA in the Auckland Birthweight Collaborative study samples

NOTCH2

1

Type 2 Diabetes

GWAS

[45]

rs10923931

Intronic

THADA

2

Type 2 Diabetes

GWAS

[45]

rs7578597

Missense: T1187A

ADAMTS9

3

Type 2 Diabetes

GWAS

[45]

rs4607103

38 kb upstream

IGF2BP2

3

Type 2 Diabetes

GWAS

[46–48]

rs4402960

Intronic

PPARG

3

Type 2 Diabetes

Candidate-gene studies

[49, 50]

rs1801282

Missense: P12A

WFS1

4

Type 2 Diabetes

Candidate-gene studies

[51–53]

rs10010131

Intron-exon junction

CDKAL1

6

Type 2 Diabetes

GWAS

[46–48, 54]

rs7754840

Intronic

JAZF1

7

Type 2 Diabetes

GWAS

[45]

rs864745

Intronic

SLC30A8

8

Type 2 Diabetes

GWAS

[47, 48]

rs13266634

Missense: R325W

CDKN2A/B

9

Type 2 Diabetes

GWAS

[46–48]

rs10811661

125 kb upstream

CDC123-CAMK1D

10

Type 2 Diabetes

GWAS

[45]

rs12779790

Intergenic region

TCF7L2

10

Type 2 Diabetes

Fine-mapping of linkage peak

[38, 55, 56]

rs7903146

Intronic

HHEX

10

Type 2 Diabetes

GWAS

[46–48]

rs1111875

7.7 kb downstream

KCNJ11

11

Type 2 Diabetes

Candidate-gene studies

[52, 57–59]

rs5219

Missense: E23K

MTNR1B

11

Type 2 Diabetes

GWAS

[60–62]

rs10830963

Intronic

rs1387153

29 kb upstream

TSPAN8-LGR5

12

Type 2 Diabetes

GWAS

[45]

rs7961581

Intronic

HNF1B

17

Type 2 Diabetes

Candidate-gene studies

[63, 64]

rs757210

Intronic

NEGR1

1

Obesity

GWAS

[65, 66]

rs2568958

16.7 kb downstream

rs2815752

64 kb downstream

SEC16B

1

Obesity

GWAS

[65]

rs10913469

Intronic

ADIPOR1

1

Obesity

GWAS

[67]

rs3820152

Intronic

TMEM18

2

Obesity

GWAS

[65, 66]

rs7561317

23 kb upstream

rs6548238

33 kb upstream

INSIG2

2

Obesity

GWAS

[68, 69]

rs7566605

10 kb upstream

rs2012693

25.8 kb upstream

ETV5 - DGKG

3

Obesity

GWAS

[65]

rs7647305

Intergenic

GNPDA2

4

Obesity

GWAS

[66]

rs10938397

453.9 kb downstream

NCR3 - AIF1

6

Obesity

GWAS

[65]

rs2844479

Intergenic

NAMPT

7

Obesity

Candidate gene study

[70]

rs10487818

Intronic

MTMR9

8

Obesity

GWAS

[71]

rs2293855

intronic

LPL

8

Obesity

GWAS

[67]

rs3200218

3'UTR

PTER

10

Obesity

GWAS

[72]

rs10508503

179 kb upstream

PFKP

10

Obesity

GWAS

[67, 69]

rs6602024

Intronic

rs2388395

317 kb upstream

rs2388399

317 kb upstream

rs2388397

317 kb upstream

MTCH2

11

Obesity

GWAS

[66]

rs10838738

Intronic

BDNF

11

Obesity

GWAS

[65]

rs6265

Missense V66M

rs925946

9.2 kb upstream

ADIPOR2

12

[67]

rs2286385

Intronic

BCDIN3 D - FAIM2

12

Obesity

GWAS

[65]

rs7138803

Intergenic

MAF

16

Obesity

GWAS

[72]

rs1424233

48 kb downstream

SH2B1

16

Obesity

GWAS

[65, 66]

rs7498665

Missense A434T

FTO

16

Obesity and Type 2 diabetes

GWAS

[65, 67, 73, 74]

rs9939609

Intronic

rs6499640

Intronic

rs8050136

Intronic

NCP1

16

Obesity

GWAS

[72]

rs1805081

Missense H 215R

MC4R

18

Obesity

GWAS

[65, 75, 76]

rs17782313

187.5 kb upstream

rs17700633

109.1 kb upstream

rs12970134

153.8 kb upstream

rs4450508

125.1 kb upstream

rs477181

142.5 kb upstream

rs502933

142 kb upstream

KCTD15

19

Obesity

GWAS

[65, 66]

rs11084753

17 kb downstream

rs29941

4.4 kb downstream

CTNNBL1

20

Obesity

GWAS

[69]

rs6013029

Intronic

rs16986921

Intronic

rs6020712

Intronic

rs6020846

Intronic

rs6020395

Intronic

rs16986890

Intronic

rs6096781

26.7 kb downstream

rs6020339

Intronic