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Table 1 Analysis of association between LXR alleles and T2D in French cases vs control

From: Functional and genetic analysis in type 2 diabetes of Liver X receptor alleles – a cohort study

SNP

        

Call

HWE

 

Name

Position

Allelea

 

#11b

#12

#22

%1c

%2

rate %

P valued

O.R. ± C.I.e

LXRA

           

rs4752822

5'

T>C

NDg

522

332

53

76

24

96

0.93

1.04 [0.89–1.21]

   

T2Dg

537

360

57

75

25

   

rs61896015

intron 2

C>A

ND

711

180

16

88

12

97

0.79

1.13 [0.93–1.37]

   

T2D

729

221

15

87

13

   

rs12221497

intron 2

G>A

ND

718

180

17

88

12

97

0.69

1.09 [0.90–1.33]

   

T2D

727

216

13

87

13

   

rs2279239

intron 4

T>C

ND

518

328

52

76

24

97

0.94

1.03 [0.89–1.20]

   

T2D

549

355

60

75

25

   

rs2279238

exon 5

C>T

ND

715

195

12

88

12

98

0.62

0.99 [0.81–1.2]

   

T2D

754

192

17

88

12

   

LXRB

           

rs35463555

promoter

G>A

ND

417

388

106

67

33

96

0.74

0.94 [0.82–1.08]

 

(-2046)

 

T2D

433

432

84

68

32

   

rs17373080

promoter

C>G

ND

411

386

104

67

33

96

0.42

0.94 [0.82–1.08]

 

(-202)

 

T2D

430

438

80

68

32

   

rs2248949

intron 6

C>T

ND

310

432

139

60

40

93

0.05

1.02 [0.90–1.17]

   

T2D

303

476

136

59

41

   
  1. a) Common allele is written first. b) #11 = number of subjects homozygous for common allele, #12 = number of heterozygous subjects, #22 = number of subjects homozygous for rare allele. c) Major allele frequency. d) HWE P values were calculated in HAPLOVIEW [32]. e) O.R. ± C.I. = odds ratio ± confidence intervals. ORs were calculated as (number allele 2 among cases * number allele 1 among controls)/(number allele 1 among cases * number allele 2 among controls). f) Pearson's Chi2 (d.f. = 1) was used to compare allele frequencies between T2D-cases and controls. g) ND = non-diabetic controls, T2D = type 2 diabete