SNP | Chromosome location | Alleles* | Number genotyped | HW P-value | Frequency of putative risk allele | ||
---|---|---|---|---|---|---|---|
Caucasian cohort | HapMap CEU | SA cohort | |||||
rs3754777 | 2q24 (STK39 intron) | G/A | 1367 | 0.63 | 0.17 | 0.13 | 0.16 |
rs35929607 | 2q24 (STK39 intron) | A/G | 1361 | 0.79 | 0.19 | NA | 0.34 |
rs6749447 | 2q24 (STK39 intron) | T/G | 1369 | 0.32 | 0.29 | 0.28 | 0.52 |
rs4977950 | 9p21 (not within gene) | G/C | 1365 | 0.46 | 0.15 | 0.18 | NA |