A 4q35.2 subtelomeric deletion identified in a screen of patients with co-morbid psychiatric illness and mental retardation

Background Cryptic structural abnormalities within the subtelomeric regions of chromosomes have been the focus of much recent research because of their discovery in a percentage of people with mental retardation (UK terminology: learning disability). These studies focused on subjects (largely children) with various severities of intellectual impairment with or without additional physical clinical features such as dysmorphisms. However it is well established that prevalence of schizophrenia is around three times greater in those with mild mental retardation. The rates of bipolar disorder and major depressive disorder have also been reported as increased in people with mental retardation. We describe here a screen for telomeric abnormalities in a cohort of 69 patients in which mental retardation co-exists with severe psychiatric illness. Methods We have applied two techniques, subtelomeric fluorescence in situ hybridisation (FISH) and multiplex amplifiable probe hybridisation (MAPH) to detect abnormalities in the patient group. Results A subtelomeric deletion was discovered involving loss of 4q in a patient with co-morbid schizoaffective disorder and mental retardation. Conclusion The precise region of loss has been defined allowing us to identify genes that may contribute to the clinical phenotype through hemizygosity. Interestingly, the region of 4q loss exactly matches that linked to bipolar affective disorder in a large multiply affected Australian kindred.

patient group, a further significant increase of the allele was seen in the "Severe cases" patient group. These results appeared to indicate association of HLA-B* 4601 with the severity of SARS infection in Asian populations. Independent studies are needed to test these results.

Background
In late April 2003, Taiwan was stroked by an epidemic of severe acute respiratory syndrome (SARS). A general SARS panic spread over the country when the Taipei Municipal Hoping hospital announced its shutdown as a preventive measure following heavy hospital infection. Further closedown of medical services, including emergency services, appeared sporadically in other hospitals and clinics all over the country. This caused great anxiety among all health care workers. On May 4, 2003, a suspected SARS patient with respiratory failure was brought to the Emergency Service of the Mackay Memorial Hospital in Taipei. The patient was admitted into SARS wards and died 24 hours later. However, during this short period the patient most likely infected 4 health care workers and 5 individuals who were either patients or visiting family members of other patients present at the same time. The hospital set up emergency procedures, and most manpower was put into caring of SARS patients. Taiwan hospitals were facing an unpredictable and invisible enemy for the first time in recent 50 years. The human leukocyte antigen (HLA) system is widely used as a strategy in the search for the etiology of infectious diseases and autoimmune disorders. In this study we investigated the HLA-class I and II system for evidence of disease association. It was hoped that the discovery of disease susceptibility or a disease protection phenotype in the Taiwan population would help into setting up a preventive screening program for health care workers at risk.

Patients
In the course of March 7,13,18,19,21,22,26,27, and 31) were infected from the same source (unfortunately this "super-spreader" probable SARS patient died 24 hours after admission in hospital and was not studied). Twenty eight cases of the 65 cases were not positive for SARS, and were referred as "Excluded fever patients" in tables 2 and 4. Among the "Excluded fever patients" group, two patients showed positive serological tests for M. pneumonias, one had tuberculosis, one patient presented lung edema, and the rest had no lung lesions.
Fourteen cases were also tested for HBsAg, all showed negative results.
Serum samples from 27 probable SARS cases were tested for Chlamydia pneumoniae, C. psittaci and C. trachomatis (Chlamydia IgM kit, Savyon Diagnostic, Israel), and 11 were further tested for IgG and IgA antibodies. All showed negative results. Among 24 probable SARS cases who had been tested for M. pneumoniae (IgM, Savyon Diagnostic, Israel), only two cases tested positive. These two cases also had diffuse bilateral lung lesions and positive SARS-CoV RNA test. It is possible that 8% of probable SARS cases were co-infected with M. pneumoniae. Finally, 15 cases were also tested for Legionella pneumophilia serogroup 1 antigen (Binax, US), and showed negative results.
All 37 probable cases revealed history of close or indirect contact with another suspected probable case of SARS. Three patients with severe respiratory failure airways had been intubated and mechanical ventilation was applied during hospitalization. Later, two patients died and one survived. Finally, among the 35 probable SARS cases of our hospital four patients died during hospitalization, giving an 11% mortality rate. Except for two rapid severe/ fatal cases most probable SARS patients were admitted to the SARS wards for periods longer than two weeks. A final diagnosis of "probable SARS" was declared upon exclusion of all other possible causes.
In brief, 33 cases of "probable SARS patients" and 28 "Excluded fever patients" were retained for the analysis. This study was performed with approval of the ethics committee of the Mackay Memorial Hospital in Taipei.

Controls
Control A Blood samples were obtained at the end of May 2003 from 62 health care workers who had possibly been exposed to coronavirus and were not infected. These 62 health care workers were either working at emergency services, SARS wards (doctors and nurses) or at the out patient clinic (phlebotomists) of our hospital in May 2003. These 62 health care workers were included in control A (table 2) and had followed World Health Organization (WHO) vigorous measures against infection. Another 39 blood samples from non-infected health care workers from the Taipei Municipal Hoping Hospital were added to control A. These 39 controls had been treating SARS patients in April 2003 without adequate protection from infection, and about 10% of health care workers from the same wards developed probable SARS. In brief, 101 high risk non-infected health care workers were retained as control A for the analysis. Informed consent was obtained from all subjects.

Control B
HLA-A, B and DRB1 typing of 190 normal healthy, unrelated Taiwanese was obtained from data collected in our laboratory and used as control B. For control B, HLA-A, B class I typing was performed by serological methods only [3]. HLA-DRB1 typing was performed by allele typing as described below for the other groups.

HLA allele typing
Blood samples were collected in EDTA vacutainers. Buffy coat were lysed and genomic DNA was isolated by using proteinase K treatment and Q1Aamp blood kit (Q1Agen, Hilden, Germany) according to the manufacturer's instructions. Suspected SARS samples were processed in a bio-safety level-3 environment. Medium resolution allele typing for HLA-A, B and DRB1 loci was performed using PCR amplification followed by sequence-specific oligonucleotide probing (PCR-SSOP), (Dynal Biotech Ltd; Wirral, U.K.). Amplified sequences were hybridized to arrays of immobilized probes (35 probes for HLA-A, 56 for HLA-B, and 38 for HLA-DRB1).

Statistical analysis
HLA class I and class II allele frequencies were estimated by direct counting assuming that there was no blanks. Odds ratios (OR) were obtained from standard contingency table analysis using Haldane's modification of Woolf's method [4,5]. Statistical significance was performed by a two tails Fisher's exact test [6]. Since small size samples were used in the analysis, the risk of introducing a bias in estimating the probability (P-value) and wrongly accepting association (type I error) was corrected using the method of Edwards (7). In this method the Pvalue is multiplied by the number of independent comparisons at every locus, thereby giving a more powerful corrected P-value (Pc-value) that may be interpreted with confidence. Lastly, when analyzing serological data, data in the patient group were converted to serology typing using the World Health Organization nomenclature (WHO) table of correspondence [8].

Results
In this study we performed allele typing on 37 probable SARS cases, 28 fever patients of suspected SARS (these 28 patients were later excluded for being non SARS patients), and 101 health care workers (control A) exposed or possibly exposed to SARS coronavirus but non-infected health

Discussion
HLA-B gene was found to be associated with susceptibility or protection from infection when analyzing descendants of Dutch colonists' survivors of 19 th Century yellow fever and typhoid epidemics [10]. Other studies also indicated that HLA variations were associated with susceptibility or resistance to malaria, tuberculosis, leprosy, HIV and hepatitis virus persistence [11,12]. In ethnic Thai, HLA-A and B alleles were confirmed to be associated with disease severity and clinical outcome of exposure to dengue virus in previously exposed immunologically primed individuals [13]. Moreover, direct evidence of human coronavirus OC43 interaction with HLA class I molecules at the cell surface to establish infection was also described [14].
Consequently we carried out a study to analyze the relation between HLA class I and class II alleles, in SARS coronavirus infection, and/or the severity of the disease. In this study, no association between HLA class II allele and SARS coronavirus infection was seen. Although HLA-B* 4601 frequency in the 33 probable SARS patients (table 2) was only slightly higher than the frequencies seen in control A or control B (P = 0.04, Pc = n.s. and P = 0.06, Pc = n.s., respectively). On the contrary, the frequency of HLA-B* 4601 in the five severe cases (table 4) was slightly increased when compared to the 28 excluded fever patients (P = 0.007, Pc = ns), but the difference was clearly significant when compared to control A (P = 0.0008, Pc = 0.03). This increased HLA-B* 4601 difference was unique to the five severe cases patients and may indicate association with the severity of SARS. A susceptibly of HLA-B* 5401/B54 or B* 3901/B39 to infection rather than to the severity of the disease (table 2) could not be concluded upon (Pc = n.s.) and requires further studies. HLA-B13 is widely distributed throughout Asia [18] where it is mostly represented by HLA-B* 1301 (4-30%) and rarely by B* 1302 (0-2%) [Unpublished data]. Furthermore, HLA-B13 is seen with frequencies greater than 16% among most n= count of alleles; P = P-value; n.s. = not significant. † The correction factor (number of different alleles or number of comparisons) is shown within parenthesis; Pc-value = P × Correction factor (Edward, 1974).
indigenous tribes of the central mountain area in Taiwan [9] and in the Taiwanese (9.1%). In this study, we found that presence of HLA-B* 1301/B13 was decreased in the 33 probable SARS patients when compared with the two control groups A (OR = 0.16, P = 0.03, Pc = n.s.) or B (OR = 0.16, P = 0.02, Pc = n.s.). However, only the analysis of a larger case-control data set would confirm or refute association of HLA-B* 1301 with resistance to coronavirus infection.
Taiwan population is heterogeneous and comprises 91% Taiwanese, 7.5% Chinese who arrived from many different provinces of China after World War II, and 1.5% of indigenous peoples established there since several millenniums. The Taiwanese comprised the Minnan and Hakka people groups, and are the descendants of early settlers from the southeast coast of China (Fujian and Guangdong Provinces) during the last few centuries. The genetic profile of the Taiwanese shows many affinities to southern Asian populations [3] and share the same origin with Singapore Chinese and Thai Chinese who also originated from the southeast coast of China. According to archeological evidences [15], the populations in the delta of the Hong River in northern Vietnam are also likely related to these populations. After the outbreak of SARS coronavirus infection in the Guangdong Province of China, it was surprising to observe that the spreading of the disease was mostly confined among southern Asian populations (Hong-Kong peoples, Vietnamese, Singaporeans and Taiwanese). Density of populations possibly favored the growth of the epidemic. The question aroused as to whether affected southern Asian populations were more susceptible to SARS infection than peoples of northern China (Beijing), Japan, or Korea. Many peoples in Beijing generally considered as northern Chinese [16], were also infected, however, infection in Beijing could be attributed to heterogeneity of populations following important recent migration of southern Chinese and population resettlement during the Cultural Revolution.
The probable SARS cases in this report consist mainly of southern Chinese origin Taiwanese (non indigenous peoples). Contraction of SARS by Taiwan indigenous individuals from any of the nine tribes of Taiwan has not yet been reported to this day. It is possible that the HLA make up of the Taiwan indigenous peoples has little in common to the Taiwanese [9] and may not contain any element favoring SARS infection. Also, HLA-B* 4601/B46 displays higher frequencies in Southern Han (15.4%), in Singaporean (15.1%) and in Vietnamese (13.2%) than in Northern Han (2.8%) [18], but the allele has rarely been seen among indigenous peoples [9] except in children of intermarriage between Taiwanese and indigenous peoples [9]. Interestingly, HLA-B* 4601/B46 is also seldom seen in Europeans populations where very few cases of SARS infection of individuals of European origin were reported [17].
The presence or absence of HLA-B* 4601 in a population appeared to be an important element that acted during the outbreak of the SARS epidemic. Certainly, further independent studies are still needed to confirm this hypothesis. However, Taiwan indigenous peoples have no HLA-B* 4601 and have very low population density. This does not exclude that they may have avoided infection only by chance, even though many indigenous peoples are now urbanized and would have run the same risk as Taiwanese. Southern Asian peoples, not only live in highly densely populated regions, but also have less variation in their HLA related immune repertoires than European or African populations [Variation was inferred here from the heterozygosity (h = 1 -sum of squares of allele frequencies) seen in these populations, and h was obtained and calculated (data not shown) from published data [18]], which as a whole creates a favorable factor for rapid settling of any epidemic. It becomes evident that authorities must keep a state of disease awareness at all times. Little is known on the routes of infection of SARS coronavirus [19]. In this study, the effect of HLA alleles on the resistance or susceptibility to SARS coronavirus infection was shown to be associated to class I alleles. No association with class II alleles was seen. Quickly establishing a procedure of mass screening for health care workers at risk of exposure to SARS coronavirus by detecting HLA-B* 4601 and possibly HLA-B* 1301 alleles appears justified. The results of such screening would help hospitals to better guard their personals against infection, make the workplace safer, and help to ease the tension and anxiety seen in the hospital environment.