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Table 2 Predictions regarding the influence of SNPs in the promoters of erythroid genes (except the hemoglobin subunit genes) on TBP–TATA affinity, as performed by SNP-TATA-Z-tester [31]

From: Unannotated single nucleotide polymorphisms in the TATA box of erythropoiesis genes show in vitro positive involvements in cognitive and mental disorders

Gene

Alleles: WT or mut

DNA sequence, TATA-like box; 5′-3′

Prognosis, −ln KD

ALAS1

WT

rs564394089:A

rs1046254329:A

rs905035347:T

ctcccgctgtatattaaggcgccggc

ctacAgctgtatattaaggcgccggc

ctaccgctAtatattaaggcgccggc

ctaccgctatatattaaggTgccggc

20.11

20.23

20.40

20.11

CA1

WT

rs540950375:T

rs991064314:T

ggaatgggcagcttatgtacaggggg

ggaatgggcaTcttatgtacaggggg

ggaatgggTagcttatgtacaggggg

19.81

19.70

19.82

CA1_2

WT

rs557418569:G

rs538698304:C

cttgggcatttttatagaaacttact

cttgggcGtttttatagaaacttact

cttgggcattttCatagaaacttact

20.22

20.16

19.61

HOXB2

WT

rs762972656:T

aggactccagcgaaattacagggaat

aggactccaTcgaaattacagggaat

17.98

17.92

EPOR

WT

rs1006576690:T

rs971717705:C

rs567946217:A

rs567946217:C

cgtagcagacaaaaatagatgacgtg

cgtagcagacaaaTatagatgacgtg

cgtagcagacaaaaaCagatgacgtg

cgtagcagacaaaaataAatgacgtg

cgtagcagacaaaaataCatgacgtg

18.24

19.39

18.11

19.33

18.51

GYPB

WT

rs3967038:C

rs3967038:A

gcctactagctgttatcttccaggcc

gcctacCagctgttatcttccaggcc

gcctacAagctgttatcttccaggcc

18.26

18.30

18.23

GYPC

WT

rs970970552:A

rs911469201:A

rs989175270:G

cattggggagttttccctgcactcct

cattAgggagttttccctgcactcct

cattggggagttttccctAcactcct

cattggggagttttccctgGactcct

16.97

17.83

17.13

17.27

EDRF1

WT

rs946240545:G

rs774081749:G

rs895690311:G

tcgcgagatttaatggcgagtcacag

tcgcgagGtttaatggcgagtcacag

tcgcgagattGaatggcgagtcacag

tcgcgagatttaatggcgGgtcacag

18.45

18.34

17.76

18.18

  1. Notes: See “Notes” under Table 1. Genes: ALAS1 Aminolevulinate synthase 1; CA1 Carbonic anhydrase 1; CA1_2 Carbonic anhydrase promoter 2; HOXB2 Homeobox B2; EPOR Erythropoietin receptor; GYPB Glycophorin B; GYPC Glycophorin C; and EDRF1 Erythroid differentiation regulatory factor 1