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Table 1 List of genes, their SNPs, positions, and genotyping data based on the whole cohort (N = 449)

From: Association of CYP gene polymorphisms with breast cancer risk and prognostic factors in the Jordanian population

Gene

SNP_ID

Positiona

SNP

SNP Location

Assay pass rateb

CYP19A1

rs7176005

15:51339082

C > TMA

2 KB Upstream Variant

97%

rs6493497

15:51338638

G > AMA

2 KB Upstream Variant

96%

rs700519

15:51215771

G > AMA

Missense Variant

97%

rs10046

15:51210789

G > AMA

3 Prime UTR Variant

96%

rs4646

15:51210647

AMA > C

3 Prime UTR Variant

97%

CYP2C9

rs1799853

10:94942290

C > TMA

Missense Variant

96%

rs4086116

10:94947445

C > TMA

Intron Variant

96%

CYP2C19

rs4244285

10:94781859

G > AMA

Synonymous Variant

94%

CYP1B1

rs10175368

2:38080719

C > TMA

Ningle Nucleotide Variant

96%

CYP3A4

rs35599367

7:99768693

G > AMA

Intron Variant

97%

CYP1A2

rs762551

15:74749576

CMA > A

Intron Variant

97%

  1. MA minor allele
  2. a Chromosome positions are based on NCBI Human Genome Assembly Build
  3. b Ratio of the number of discordant genotypes to the number of duplicates