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Table 1 KEGG pathway enrichment analysis for differentially expressed genes

From: Assessment of risk based on variant pathways and establishment of an artificial neural network model of thyroid cancer

Term

Enrichment score

Count

P value

Genes

Graft-versus-host disease

23.93073593

8

2.52E-08

CD86, CD80, HLA-DRB5, FAS, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Allograft rejection

21.34362934

8

5.89E-08

CD86, CD80, HLA-DRB5, FAS, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Type I diabetes mellitus

18.80272109

8

1.48E-07

CD86, CD80, HLA-DRB5, FAS, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Autoimmune thyroid disease

15.18681319

8

6.80E-07

CD86, CD80, HLA-DRB5, FAS, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Viral myocarditis

13.85463659

8

1.29E-06

CD86, CD80, CASP8, HLA-DRB5, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Herpes simplex infection

6.473067916

12

1.59E-06

DDX58, HMGN1, IFIH1, GTF2IRD1, CASP8, HLA-DRB5, JAK2, FAS, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Tuberculosis

5.577078289

10

5.85E-05

FCGR1A, CASP8, HLA-DRB5, FCER1G, ATP6V1H, JAK2, CLEC7A, HLA-DMA, HLA-DQA1, HLA-DRA

Cell adhesion molecules (CAMs)

6.256539235

9

7.58E-05

CLDN16, CD86, CD80, HLA-DRB5, L1CAM, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Intestinal immune network for IgA production

12.60182371

6

9.50E-05

CD86, CD80, HLA-DRB5, HLA-DMA, HLA-DQA1, HLA-DRA

Phagosome

5.806722689

9

1.28E-04

FCGR1A, HLA-DRB5, ITGB5, ATP6V1H, CLEC7A, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Asthma

16.45238095

5

2.05E-04

HLA-DRB5, FCER1G, HLA-DMA, HLA-DQA1, HLA-DRA

Rheumatoid arthritis

7.852272727

7

2.26E-04

CD86, CD80, HLA-DRB5, ATP6V1H, HLA-DMA, HLA-DQA1, HLA-DRA

Influenza A

5.10591133

9

3.11E-04

DDX58, IFIH1, HLA-DRB5, JAK2, CPSF4, FAS, HLA-DMA, HLA-DQA1, HLA-DRA

Systemic lupus erythematosus

5.893390192

8

3.50E-04

HIST1H2AC, CD86, CD80, FCGR1A, HLA-DRB5, HLA-DMA, HLA-DQA1, HLA-DRA

Leishmaniasis

8.342052314

6

6.70E-04

FCGR1A, HLA-DRB5, JAK2, HLA-DMA, HLA-DQA1, HLA-DRA

Antigen processing and presentation

7.793233083

6

9.15E-04

KLRC4, HLA-DRB5, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA

Toxoplasmosis

5.855932203

7

0.001089

CASP8, HLA-DRB5, JAK2, BIRC3, HLA-DMA, HLA-DQA1, HLA-DRA

Staphylococcus aureus infection

9.14021164

5

0.001978

FCGR1A, HLA-DRB5, HLA-DMA, HLA-DQA1, HLA-DRA

Inflammatory bowel disease (IBD)

7.712053571

5

0.003688

IL18RAP, HLA-DRB5, HLA-DMA, HLA-DQA1, HLA-DRA

HTLV-I infection

2.69921875

7

0.04181

IL2RB, HLA-DRB5, HLA-E, HLA-DMA, HLA-DQA1, HLA-DRA, APC

Measles

3.711063373

5

0.043409

DDX58, IL2RB, IFIH1, JAK2, FAS