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Table 2 Rare and novel variants present in coding regions of 91 genes associated with non-syndromic hereditary hearing loss

From: Novel EYA4 variant in Slovak family with late onset autosomal dominant hearing loss: a case report

Rare and novel variants present in panel of NSNHL genes in proband

Gene

Nucleotide

Exon

rsID

Sequence impact

CADD scaled

PolyPhen

SIFT

MAF 1000G all

MAF ESP all

MAF ExAC all

USH2A

NM_206933.2

c.14074G > A

p.Gly4692Arg

64

rs45549044

Missense

19.61

PD

T

0.002

0.0048

0.0048

EYA4

NM_004100.4

c.804G > C

p.Gln268His

10

N/A

Missense, Splicing region variant

25

PD

D

N/A

N/A

N/A

MCPH1

NM_024596.4

c.2180C > T

p.Pro727Leu

12

rs199861426

Missense

13.36

B

D

N/A

0.0008

0.0011

MYO7A

NM_000260.3

c.5598C > A

p.Leu1866=

40

rs111033504

Synonymous

3.5

N/A

N/A

0.002

N/A

0.0022

OTOA

NM_144672.3

c.2229C > T

p.Ala743=

20

rs461179

Synonymous

1.96

N/A

N/A

N/A

N/A

0.0094

  1. 1000G 1000 Genomes project, ESP Exome sequencing project, ExAC Exome Aggregation Consortium, MAF Minor allele frequency, PD probably damaging, B benign, T tolerated, D deleterious