Table 2 Whole Exome Sequencing detail of coverage and number of reads
From: An immunocompetent patient with a nonsense mutation in NHEJ1 gene
Type | Value | Type | Value |
|---|---|---|---|
Total Reads | 74,338,832 | Percent reads on target | 46.45% |
Passed filter Unique Reads aligned | 74,253,527 | Percent Passed filter Unique Reads aligned | 99.89% |
Mean Target Coverage | 39.07 | Percent on Target | 46.45% |
Percent Duplicate | 22.38% | Percent duplicate in analysis | 0% |
Capture Method | Whole exome sequencing | Run method | NextSeq 500 |
GC content | 44% | Sequence length | 125 |
Nucleotide Covered GTE_1 | 98% | Nucleotide Covered GTE_5 | 87% |
Nucleotide Covered GTE_8 | 79% | Nucleotide Covered GTE_10 | 75% |
Nucleotide Covered GTE_15 | 65% | Nucleotide Covered GTE_20 | 58% |
Nucleotide Covered GTE_30 | 47% | Nucleotide Covered GTE_40 | 38% |
Nucleotide Covered GTE_50 | 31% | Nucleotide Covered GTE_60 | 24% |
Nucleotide Covered GTE_70 | 19% | Nucleotide Covered GTE_80 | 14% |
Nucleotide Covered GTE_90 | 10% | Nucleotide Covered GTE_100 | 8% |