Confirmed APOBEC3D Haplotypes (n = 168)
|
97R, 238 T, 248R
|
88 (52.3)
|
i/i
|
97C, 238 T, 248R
|
1 (0.6)
|
ii/ii
|
97C(het), 238 T, 248R
|
18 (10.7)
|
i/ii
|
97R, 238A(het), 248R
|
10 (6)
|
i/iii
|
97R, 238 T, 248 K
|
1 (0.6)
|
iv/iv
|
97R, 238 T, 248 K(het)
|
27 (16)
|
i/iv
|
Minor variant frequency < 5%
|
7 (4.1)
|
Not assigned
|
Othersa
|
16 (9.7)
|
Not assigned
|
Unconfirmed APOBEC3D Haplotypes
|
None
|
Confirmed APOBEC3F Haplotypes (n = 154)
|
48R, 78A, 87I, 108A, 231 V, 307Y
|
5 (3.2)
|
i/i
|
48R, 78A, 87I, 108S, 231 V, 307Y
|
2 (1.3)
|
iii/iii
|
48R, 78A, 87I, 108S(het), 231 V, 307Y
|
32 (20.8)
|
i/iii
|
48R, 78A, 87I, 108A, 231 V, 307C(het)
|
5 (3.2)
|
i/iv
|
48R, 78 V, 87I, 108S, 231 V, 307Y
|
1 (0.6)
|
vi/vi
|
48R, 78 V (het), 87I, 108S, 231 V, 307Y
|
2 (1.3)
|
vi/iii
|
Minor variant frequency < 5%
|
5 (3.2)
|
Not assigned
|
Othersa
|
51 (33.1)
|
Not assigned
|
Unconfirmed APOBEC3F Haplotypes
|
48R, 78 V (het), 87I, 108S (het), 231 V, 307Y
|
21 (13.6)
|
Not assigned
|
48R, 78 V (het), 87I, 108S (het), 231I (het), 307Y
|
14 (9.1)
|
Not assigned
|
48R, 78 V (het), 87I, 108S, 231I (het), 307Y
|
8 (5.2)
|
Not assigned
|
48R, 78 V (het), 87I, 108S (het), 231I, 307Y
|
2 (1.3)
|
Not assigned
|
48P (het), 78A, 87I, 108S (het), 231 V, 307Y
|
6 (3.9)
|
Not assigned
|
Confirmed APOBEC3G Haplotypes (n = 165)
|
186H, 275Q, 363G
|
5 (3.1)
|
i/i
|
186R, 275Q, 363G
|
20 (12.1)
|
ii/ii
|
186R (het), 275Q, 363G
|
43 (26.1)
|
i/ii
|
186H, 275E, 363G
|
3 (1.8)
|
iii/iii
|
186H, 275E(het), 363G
|
22 (13.3)
|
i/iii
|
186H, 275Q, 363R(het)
|
9 (5.5)
|
iv/iv
|
Minor variant frequency < 5%
|
11 (6.6)
|
Not assigned
|
Othersa
|
52 (31.5)
|
Not assigned
|
Unconfirmed APOBEC3G Haplotypes
|
None
|
Confirmed APOBEC3H Haplotypesb (n = 133)
|
15 N, 18R, 105R, 121E, 178D
|
38 (28.6)
|
ii/ii
|
15Δ,18R, 105R, 121E,178E
|
25 (18.8)
|
x/x
|
15Δ(het), 18R, 105R, 121E, 178D
|
36 (27.1)
|
ii/iii
|
15Δ, 18 L, 105R, 121E, 178D
|
6 (4.5)
|
iv/iv
|
15Δ, 18 L(het), 105R, 121E, 178D
|
7 (5.3)
|
iv/iii
|
Othera
|
10 (7.4)
|
Not assigned
|
Unconfirmed APOBEC3H Haplotypesb
|
15Δ(het), 18R, 105R, 121E(het), 178D
|
4 (3)
|
Not assigned
|
15Δ(het), 18 L(het), 105R, 121E, 178D
|
7 (5.3)
|
Not assigned
|