Variation (amino acid and its position) | Frequency (%) | Haplotypes within individuals |
---|---|---|
Confirmed APOBEC3D Haplotypes (n = 168) | ||
97R, 238 T, 248R | 88 (52.3) | i/i |
97C, 238 T, 248R | 1 (0.6) | ii/ii |
97C(het), 238 T, 248R | 18 (10.7) | i/ii |
97R, 238A(het), 248R | 10 (6) | i/iii |
97R, 238 T, 248 K | 1 (0.6) | iv/iv |
97R, 238 T, 248 K(het) | 27 (16) | i/iv |
Minor variant frequency < 5% | 7 (4.1) | Not assigned |
Othersa | 16 (9.7) | Not assigned |
Unconfirmed APOBEC3D Haplotypes | ||
None | ||
Confirmed APOBEC3F Haplotypes (n = 154) | ||
48R, 78A, 87I, 108A, 231 V, 307Y | 5 (3.2) | i/i |
48R, 78A, 87I, 108S, 231 V, 307Y | 2 (1.3) | iii/iii |
48R, 78A, 87I, 108S(het), 231 V, 307Y | 32 (20.8) | i/iii |
48R, 78A, 87I, 108A, 231 V, 307C(het) | 5 (3.2) | i/iv |
48R, 78 V, 87I, 108S, 231 V, 307Y | 1 (0.6) | vi/vi |
48R, 78 V (het), 87I, 108S, 231 V, 307Y | 2 (1.3) | vi/iii |
Minor variant frequency < 5% | 5 (3.2) | Not assigned |
Othersa | 51 (33.1) | Not assigned |
Unconfirmed APOBEC3F Haplotypes | ||
48R, 78 V (het), 87I, 108S (het), 231 V, 307Y | 21 (13.6) | Not assigned |
48R, 78 V (het), 87I, 108S (het), 231I (het), 307Y | 14 (9.1) | Not assigned |
48R, 78 V (het), 87I, 108S, 231I (het), 307Y | 8 (5.2) | Not assigned |
48R, 78 V (het), 87I, 108S (het), 231I, 307Y | 2 (1.3) | Not assigned |
48P (het), 78A, 87I, 108S (het), 231 V, 307Y | 6 (3.9) | Not assigned |
Confirmed APOBEC3G Haplotypes (n = 165) | ||
186H, 275Q, 363G | 5 (3.1) | i/i |
186R, 275Q, 363G | 20 (12.1) | ii/ii |
186R (het), 275Q, 363G | 43 (26.1) | i/ii |
186H, 275E, 363G | 3 (1.8) | iii/iii |
186H, 275E(het), 363G | 22 (13.3) | i/iii |
186H, 275Q, 363R(het) | 9 (5.5) | iv/iv |
Minor variant frequency < 5% | 11 (6.6) | Not assigned |
Othersa | 52 (31.5) | Not assigned |
Unconfirmed APOBEC3G Haplotypes | ||
None | ||
Confirmed APOBEC3H Haplotypesb (n = 133) | ||
15 N, 18R, 105R, 121E, 178D | 38 (28.6) | ii/ii |
15Δ,18R, 105R, 121E,178E | 25 (18.8) | x/x |
15Δ(het), 18R, 105R, 121E, 178D | 36 (27.1) | ii/iii |
15Δ, 18 L, 105R, 121E, 178D | 6 (4.5) | iv/iv |
15Δ, 18 L(het), 105R, 121E, 178D | 7 (5.3) | iv/iii |
Othera | 10 (7.4) | Not assigned |
Unconfirmed APOBEC3H Haplotypesb | ||
15Δ(het), 18R, 105R, 121E(het), 178D | 4 (3) | Not assigned |
15Δ(het), 18 L(het), 105R, 121E, 178D | 7 (5.3) | Not assigned |