From: Multimodal imaging in a pedigree of X-linked Retinoschisis with a novel RS1 variant
Category Code | Qualifying Criteria | Relevance to Case |
---|---|---|
PS4 | The prevalence of the variant in affected individuals is significantly increased compared to the prevalence in controls. | This variant is found in a sufficient number of relatives to qualify it as strong evidence of pathogenicity [36]. |
PM1 | Located in a mutational hot spot and/or critical and well-established functional domain (e.g. active site of an enzyme) without benign variation. | Located in well established functional domain as reported by several studies [20, 37]. |
PM2 | Absent from controls (or at extremely low frequency if recessive) in Exome Sequencing Project, 1000 Genomes or ExAC. | Absent from every databased queried. |
PM5 | Novel missense change at an amino acid residue where a different missense change determined to be pathogenic has been seen before. | Novel mutation at same amino acid as previously reported p.Thr138Ala (HGMD Database). |
PP1 | Co-segregation with disease in multiple affected family members in a gene definitively known to cause the disease. | Cosegregation in a family in a gene known to cause disease. |
PP3 | Multiple lines of computational evidence support a deleterious effect on the gene or gene product. | Multiple lines of computational evidence presented here (Table 1). |
PP4 | Patientās phenotype or family history is highly specific for a disease with a single genetic etiology. | Patient phenotype is highly specific for a disease. |