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Table 3 In silico analysis to determine the causal relationship of the mutation and RETT syndrome

From: Spectrum of MECP2 mutations in Vietnamese patients with RETT syndrome

Nucleotide change

Amino acid change

Domain

MutationTaster

PolyPhen-2

Reference

c.473C > T

p.T158 M

MDB

Disease causing

Probably damaging with a score of 1.000

Rettbase

c.808C > T

p. R270X

TRD-NLS

Disease causing

N/A

Rettbase

c.763C > T

p.R255X

TRD

Disease causing

N/A

Rettbase

c.502C > T,

p. R168X

Inter-domain region

Disease causing

N/A

Rettbase

c.1384-1385del GT

p.V462fs

C- term

Disease causing

N/A

Novel

c.763C > T

p.R255X

TRD

Disease causing

N/A

Rettbase

c.1205insT

p.402Lfs

C - term

Disease causing

N/A

Novel

c.(164–182)del 19

p.Q56fs

TRD-NLS, 3’UTR

Disease causing

N/A

Rettbase

c.(1148–1193)del 46

p.L383fs

C - term

Disease causing

N/A

Rettbase

c.717delC

p.A240fs

TRD

Disease causing

N/A

Novel

c.806delG

p. G269fs

TRD-NLS

Disease causing

N/A

Rettbase

c.1132_1207del77

A378fs

C – term

Disease causing

N/A

Novel

c.917G > A

p.R306H

TRD

Disease causing

Probably damaging with a score of 0.999

Rettbase

  1. N/A: Not applicable