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Fig. 1 | BMC Medical Genetics

Fig. 1

From: Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome

Fig. 1

Boxplot of accuracies and yields for imputation results across all populations. Five percent of randomly removed SNPs were imputed with IMPUTE2 using either the 1000 Genomes project phase I (1000G) or combined Chinese and Japanese haplotypes from the International HapMap project phase II (HMII) as a reference. The imputed SNPs were tested for accuracy with the previously removed SNPs. The same set of the removed SNPs was applied to all population dataset. The technique was repeated five times. a Boxplot of accuracy comparing populations and references. b Boxplot of yield comparing populations and references. Abbreviations: Indonesia (ID), Malaysia (MY), the Philippines (PI), Singapore (SG), and Thailand (TH)

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BMC Medical Genetics

ISSN: 1471-2350

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