Table 2 Common SNPs captured using the selected 14 tagSNPs in the six candidate genes based on the HapMap population data for Chinese in Beijing (Release 27)
Gene | tagSNP_ID | SNP captured | Position (hg19) |
|---|---|---|---|
IKZF3 | rs3816470 | rs9635726, rs3816470, rs9303277, rs10445308, rs9909593 | chr17:37985801 |
rs907092 | rs907092 | chr17:37922259 | |
GSDMB | rs9303281 | rs11078927, rs1008723, rs4795400, rs9303281, rs2305480, rs7219923, rs869402, rs2305479, rs7224129, rs11078926, rs2290400, rs7216389 | chr17:38074046 |
ORMDL3 | rs4795402 | rs4795403, rs4795402, rs3744246, rs4795404 | chr17:38085385 |
rs8076131 | rs4378650, rs8076131, rs12603332 | chr17:38080912 | |
ZPBP2 | rs11557466 | rs11557467, rs12936231, rs11078925, rs1054609, rs11557466, rs11870965, rs10852936, rs9907088 | chr17:38024626 |
IRF8 | rs188602 | rs188602, rs170033, rs2270502, rs381139 | chr16:85932351 |
rs4843860 | rs4843860, rs12926854, rs4843861 | chr16:85950921 | |
rs2270501 | rs2270501, rs12924316 | chr16:85932988 | |
rs191022 | rs191022 | chr16:85932132 | |
TMEM39A | rs13062955, rs12493175 | rs12492859, rs13094625, rs13081197, rs13078312, rs12493326, rs16829853, rs13081067, rs2282170, rs13062955, rs12492315, rs12493175, rs13096213, rs12496277, rs12492609 | chr3:119159658,chr3:119160413 |
rs4687859 | rs7629750, rs2282171, rs3772136, rs9846088, rs4687859, rs9872589, rs3195852 | chr3:119170371 | |
rs2282175 | rs17281647, rs2282175, rs1132202 | chr3:119182259 |