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Table 2 Cross-sectional association of 95 BMI associated SNPs on BMI in the total PROMIS cohort (N = 16,157)

From: Physical activity, smoking, and genetic predisposition to obesity in people from Pakistan: the PROMIS study

SNP

Nearest gene

Effect/other allele

β (kg/m2/allele)

SE

P

rs1000940

RABEP1

G/A

−0.06

0.05

0.19

rs10132280

STXBP6

C/A

0.01

0.06

0.87

rs1016287

FLJ30838

T/C

0.12

0.05

0.02

rs10182181

ADCY3

G/A

0.03

0.04

0.55

rs10733682

LMX1B

A/G

−0.06

0.04

0.18

rs10938397

GNPDA2

G/A

0.02

0.05

0.59

rs10968576

LINGO2

G/A

0.03

0.05

0.58

rs11030104

BDNF

A/G

0.11

0.05

0.03

rs11057405

CLIP1

G/A

−0.10

0.15

0.48

rs11126666

KCNK3

A/G

0.00

0.05

0.95

rs11165643

PTBP2

T/C

0.04

0.04

0.37

rs11191560

NT5C2

C/T

0.10

0.06

0.07

rs11583200

ELAVL4

C/T

−0.05

0.04

0.23

rs1167827

HIP1

G/A

−0.01

0.04

0.79

rs11688816

EHBP1

G/A

−0.09

0.04

0.04

rs11727676

HHIP

T/C

0.32

0.15

0.03

rs11847697

PRKD1

T/C

0.23

0.08

0.01

rs12286929

CADM1

G/A

0.01

0.05

0.85

rs12401738

FUBP1

A/G

0.04

0.05

0.42

rs12429545

OLFM4

A/G

0.10

0.06

0.07

rs12446632

GPRC5B

G/A

0.06

0.10

0.56

rs12566985

FPGT-TNNI3K

G/A

0.01

0.05

0.82

rs12885454

PRKD1

C/A

0.08

0.05

0.08

rs12940622

RPTOR

G/A

0.03

0.05

0.57

rs13021737

TMEM18

G/A

0.25

0.06

3.15E-05

rs13078960

CADM2

G/T

0.09

0.07

0.20

rs13191362

PARK2

A/G

0.00

0.07

0.98

rs13201877

IFNGR1

G/A

0.16

0.08

0.05

rs1441264

MIR548A2

A/G

0.03

0.05

0.50

rs1460676

FIGN

C/T

−0.04

0.06

0.49

rs1516725

ETV5

C/T

0.07

0.06

0.27

rs1528435

UBE2E3

T/C

−0.03

0.05

0.54

rs1558902

FTO

A/T

0.19

0.05

8.85E-05

rs16851483

RASA2

T/G

0.20

0.07

0.01

rs16907751

ZBTB10

C/T

0.02

0.06

0.69

rs16951275

MAP2K5

T/C

0.06

0.05

0.17

rs17001654

SCARB2

G/C

0.09

0.08

0.25

rs17094222

HIF1AN

C/T

0.02

0.06

0.75

rs17203016

CREB1

G/A

−0.03

0.06

0.67

rs17405819

HNF4G

T/C

0.07

0.05

0.12

rs17724992

PGPEP1

A/G

−0.06

0.04

0.16

rs1808579

C18orf8

C/T

−0.02

0.04

0.58

rs1885988

MTIF3

C/T

0.05

0.08

0.54

rs1928295

TLR4

T/C

0.04

0.05

0.41

rs2033529

TDRG1

G/A

0.08

0.06

0.14

rs2033732

RALYL

C/T

0.07

0.05

0.16

rs205262

C6orf106

G/A

0.06

0.05

0.31

rs2075650

TOMM40

A/G

−0.01

0.07

0.90

rs2080454

CBLN1

C/A

0.12

0.05

0.02

rs2112347

POC5

T/G

−0.04

0.04

0.39

rs2121279

LRP1B

T/C

0.10

0.10

0.32

rs2176040

LOC646736

A/G

0.11

0.05

0.03

rs2176598

HSD17B12

T/C

0.06

0.06

0.31

rs2207139

TFAP2B

G/A

0.10

0.05

0.07

rs2245368

PMS2L11

C/T

0.07

0.05

0.16

rs2287019

QPCTL

C/T

−0.03

0.06

0.61

rs2365389

FHIT

C/T

−0.02

0.04

0.71

rs2650492

SBK1

A/G

0.03

0.06

0.56

rs2820292

NAV1

C/A

0.09

0.04

0.06

rs2836754

ETS2

C/T

0.16

0.05

7.45E-04

rs29941

KCTD15

G/A

0.10

0.05

0.02

rs3101336

NEGR1

C/T

0.10

0.05

0.03

rs3736485

DMXL2

A/G

0.04

0.04

0.41

rs3810291

ZC3H4

A/G

0.04

0.04

0.36

rs3817334

MTCH2

T/C

0.00

0.05

0.95

rs3849570

GBE1

A/C

0.01

0.05

0.83

rs3888190

ATP2A1

A/C

0.04

0.05

0.45

rs4256980

TRIM66

G/C

0.07

0.04

0.11

rs4740619

C9orf93

T/C

−0.09

0.04

0.04

rs4787491

INO80E

G/A

−0.01

0.04

0.81

rs492400

USP37

C/T

0.03

0.05

0.54

rs543874

SEC16B

G/A

0.13

0.06

0.04

rs6091540

ZFP64

C/T

0.10

0.05

0.04

rs6465468

ASB4

T/G

−0.14

0.06

0.02

rs6477694

EPB41L4B

C/T

0.06

0.04

0.18

rs6567160

MC4R

C/T

0.24

0.05

1.15E-07

rs657452

AGBL4

A/G

−0.04

0.04

0.40

rs6804842

RARB

G/A

0.00

0.04

0.98

rs7138803

BCDIN3D

A/G

0.06

0.05

0.16

rs7141420

NRXN3

T/C

0.03

0.04

0.56

rs7164727

LOC100287559

T/C

0.06

0.05

0.20

rs7239883

LOC284260

G/A

0.07

0.05

0.17

rs7243357

GRP

T/G

0.07

0.05

0.21

rs758747

NLRC3

T/C

0.15

0.05

1.29E-03

rs7599312

ERBB4

G/A

−0.03

0.06

0.66

rs7715256

GALNT10

G/T

0.00

0.04

0.91

rs7899106

GRID1

G/A

0.34

0.14

0.01

rs7903146

TCF7L2

C/T

0.13

0.05

0.01

rs9374842

LOC285762

T/C

0.02

0.05

0.65

rs9400239

FOXO3

C/T

0.00

0.04

1.00

rs9540493

MIR548X2

A/G

0.06

0.04

0.17

rs9641123

CALCR

C/G

0.10

0.05

0.02

rs977747

TAL1

T/G

−0.07

0.04

0.13

rs9914578

SMG6

G/C

0.00

0.05

0.92

rs9925964

KAT8

A/G

−0.05

0.06

0.41

  1. Analyses were adjusted for age, age2, sex, MI status, genetic principal components (first 10)