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Table 1 Six SNPs in high (r2 > 0.8) linkage disequilibrium with rs11842874

From: Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

   

Pairwise linkage disequilibrium with rs11842874

SNP

Alleles (major/minor)

Minor allele frequency

r2

D’

rs75351348

G/A

0.085

0.85

1

rs118021693

C/G

0.058

1

1

rs76623552

A/G

0.058

1

1

rs11842874

A/G

0.066

–

–

rs1888227

T/C

0.050

1

1

rs113120232

C/T

0.067

0.867

1

rs79866171

C/G

0.058

1

1

  1. For each SNP, the major and minor alleles, minor allele frequencies, and pairwise r2 and D’ values are listed for the HapMap Central European population