Table 3 Primer sequences for the miRNA SNPs included in genotyping study using multiplex PCR reaction and MALDI-TOF MS
From: Genetic association analysis of miRNA SNPs implicates MIR145 in breast cancer susceptibility
SNP | Forward primer sequence | Reverse primer sequence | iPLEX® (Extension) primer sequence |
|---|---|---|---|
rs2829801 | ACGTTGGATGTTCCCACTCAGGCATATAGC | ACGTTGGATGTGGAGTCTATGTCCACTTCC | TGGGCTAAGCAACCA |
rs7395206 | ACGTTGGATGTCGGACGCCCAAGTTGGAG | ACGTTGGATGTCACACGCACAGTGGGTCT | GGTGGGCGGGCGGAG |
rs73798217 | ACGTTGGATGACTGGAGGTTATCAGAGAGG | ACGTTGGATGATGTGTATTCCCCAGTCTCC | ACCATTCAGTTCCTAGC |
rs353291 | ACGTTGGATGGTAGAGATGCCACAAGAGGG | ACGTTGGATGAAACCTTAAGTCTTCGTTCG | GGTTGTTCTCTGGCTGC |
rs55945735 | ACGTTGGATGGGTCTCAAACTCCTGACTTC | ACGTTGGATGCTGCATCTGAGCACTTCAAG | TGATGCCTGGCGGGGCG |
rs10902173 | ACGTTGGATGTCACAGGCACCTTTTCTCAG | ACGTTGGATGGAAGCCTGGGTATTAGGATG | ACCTTTTCTCAGCATCTG |
rs112394324 | ACGTTGGATGACTGGAGAGAGAAATTACCC | ACGTTGGATGGTTGAAACCAGAGTACATGC | CAGATACGACAGAGTGTG |
rs1292037 | ACGTTGGATGTACAGCTAGAAAAGTCCCTG | ACGTTGGATGGGAGGGAGGATTTTATGGAG | AACCTTTTCAAAACCCACA |
rs562052 | ACGTTGGATGCTCCAGGCTAGTGGAATAAC | ACGTTGGATGCTACTGCACTGATCGTGTTC | CAGATTCAAATGCCATAGCA |
rs2858059 | ACGTTGGATGCAGTAAGTATTTCTGGGGTG | ACGTTGGATGCTCCCATGATACAATGAAGG | TGGGGTGGATAAATGAATAG |
rs1062099 | ACGTTGGATGGACCCGGTCCTGATTTTAAC | ACGTTGGATGTGTGTTTCTGCCGCTTCAGT | TTTAACAGTAGACTTGAGAAG |
rs10739971 | ACGTTGGATGCCTAATAAGACCACTTAGTGT | ACGTTGGATGATGCACTAACATACAACGAG | CCACCTACTCATTTATCCCATG |
rs2858060 | ACGTTGGATGACTGTATTATCCTCAGTTC | ACGTTGGATGACTTGGGTAATCTAGCAATG | GTATTATCCTCAGTTCGTAACA |
rs2858061 | ACGTTGGATGGCTTTCAATACTACAAGGG | ACGTTGGATGAATGATACCTTTCATAGGGG | GTAAAACAAAAACAGGTAAGAG |
rs35301225 | ACGTTGGATGGGCAGTATACTTGCTGATTG | ACGTTGGATGGCTGTGAGTGTTTCTTTGGC | GGATTATTGCTCACAACAACCAG |
rs1547354 | ACGTTGGATGTTGCAGGTTTTGGCTTGTTC | ACGTTGGATGGGAGGTTAGTAGTCCTTCTA | TTTGATTCAACTGTTAGAAATGTG |
rs13137 | ACGTTGGATGAGGTGAAAGAGATGAACCAC | ACGTTGGATGAAAGCATTCCCAAAATGCTC | TCCCAAAATGCTCTATTTTAGATAG |
rs10761322 | ACGTTGGATGGCTTTTGGTTACTAAATCAC | ACGTTGGATGCTTCATATTTAGGAGGTAGC | GGCATATTTAGGAGGTAGCTACTAC |
rs693120 | ACGTTGGATGGTAGATGGCACATATAGAAA | ACGTTGGATGCATCCCTTAACTGTAAGTTC | GATTGTCAAATGAAAAGAAGAATAT |
rs1143770 | ACGTTGGATGCTGAACAATTTAATGCCTTC | ACGTTGGATGTTCAGTTTTACCAGAGGAAC | CCCCCATGCCTTCTGATATCTGTTGA |
rs77585961 | ACGTTGGATGGTTTCCTTCTCTGCAAGACG | ACGTTGGATGCACTTACTATGCAGGAAGGC | CCTACATGATGTAATACACTTACAATA |
rs7050391 | ACGTTGGATGGTAAGGCAGTATGATTAGGC | ACGTTGGATGGCCTCAACTGTCAAAGATTG | TGTTCATAATTATTATCAGAAGGCATA |
rs3851812 | ACGTTGGATGTTTTCCTCCCAAGCAAAAC | ACGTTGGATGTTCTTGCCGTTCTGTAAGTG | GGTGGAAGTGTTTTATTCTTAGTGTGA |
rs629367 | ACGTTGGATGTATGCAGCATTTTTGTGAC | ACGTTGGATGATTCTGTTTCCTCGGGTTAG | GGGGTCAGCATTTTTGTGACAATGGACA |