Table 2 a) Small intestinal biopsy or b) Peripheral blood gene expression levels vs SNP. The analysis was stratified according to disease status and performed in the celiac disease group (n = 167) and control or potential celiac disease group (n = 235) separately

a. Small intestinal biopsy

Gene symbol

SNP ID

Alleles^a

Fold change

p

Fold change

p (p_c)

ADCY9^b

rs882820

G:A

1.04 UP

0.67

1.21 DOWN

0.08

APPL2

rs10861406

G:A

1.01 DOWN

0.88

1.01 DOWN

0.79

GLS^b,c

rs6741418

C:T

1.04 UP

0.71

1.47 DOWN

0.009

HSPB1

rs1019096

G:A

1.03 DOWN

0.77

1.05 DOWN

0.66

INSR^b

rs7254060

G:A

1.05 DOWN

0.61

1.51 DOWN

0.003 (0.03)

KIF13A

rs9396802

C:T

1.11 DOWN

0.04

1.09 DOWN

0.22

NCALD^b

rs652008

C:T

1.00 DOWN

0.97

1.24 DOWN

0.005 (0.05)

NTS^b

rs11104365

C:T

1.02 UP

0.85

1.17 DOWN

0.33

PDK1^b

rs4972810

G:A

1.03 DOWN

0.85

1.09 DOWN

0.71

PPP1R12B^c

rs12734338

T:C

1.02 UP

0.95

1.04 UP

0.42

PRR5L

rs10501156

C:A

1.07 DOWN

0.29

1.62 DOWN

0.92

b. Peripheral blood

Gene symbol

SNP ID

Alleles^a

Fold change

p

Fold change

p

ADCY9^b

rs882820

G:A

Low transcript quality

Low transcript quality

APPL2

rs10861406

G:A

1.02 UP

0.85

1.00 UP

0.97

GLS^b,c

rs6741418

C:T

1.23 DOWN

0.18

1.31 DOWN

0.15

HSPB1

rs1019096

G:A

Low transcript quality

Low transcript quality

INSR^b

rs7254060

G:A

1.10 UP

0.45

1.18 DOWN

0.43

KIF13A

rs9396802

C:T

1.07 DOWN

0.59

1.01 DOWN

0.97

NCALD^b

rs652008

C:T

1.15 UP

0.29

1.03 DOWN

0.85

NTS^b

rs11104365

C:T

Not expressed

Not expressed

PDK1^b

rs4972810

G:A

Low transcript quality

Low transcript quality

PPP1R12B^c

rs12734338

T:C

Not expressed

Not expressed

PRR5L

rs10501156

C:A

1.22 DOWN

0.46

1.15 DOWN

0.64