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Table 3 Frequency of haplotypes in breast cancer cases and controls and p-values for their association with cancer as determined by haplotype trend regression.

From: Linkage disequilibrium mapping of a breast cancer susceptibility locus near RAI/PPP1R13L/iASPP

 

Breast cancer cases

Breast cancer controls

Haplotype/Agegroup

Young1)

Old2)

All ages

All ages

RAI-3'd1s RAI-3'd3s RAI-3'4c

0.0353 (0.37)4

0.054 (0.002)

0.051 (0.003)

0.022

RAI-3'd1s RAI-3'd3s RAI-3'4t

0.001 (-)

0.002 (0.12)

0.002 (0.09)

0.000

RAI-3'd1s RAI-3'd3l RAI-3'4c

0.008 (0.12)

0.006 (0.11)

0.006 (0.07)

0.001

RAI-3'd1s RAI-3'3dl RAI-3'4t

0.712 (0.02)

0.631 (0.17)

0.642 (0.06)

0.597

RAI-3'd1l RAI-3'd3s RAI-3'4c

0.244 (0.006)

0.297 (0.003)

0.290 (0.0005)

0.379

RAI-3'd1l RAI-3'd3s RAI-3'4t

0.000 (-)

0.005 (0.04)

0.005 (0.01)

0.000

RAI-3'd1l RAI-3'd3l RAI-3'4c

0.000 (-)

0.000 (0.61)

0.000 (0.11)

0.000

RAI-3'd1l RAI-3'd3l RAI-3'4t

0.000 (0.69)

0.003 (0.48)

0.003 (0.57)

0.001

RAI intron8-2a RAI intron8-3a

0.259 (0.78)

0.209 (0.01)

0.216 (0.02)

0.271

RAI intron8-2a RAI intron8-3c

0.000 (0.89)

0.007 (0.13)

0.006 (0.13)

0.000

RAI intron8-2g RAI intron8-3a

0.69 (0.12)

0.701 (0.001)

0.699 (0.0007)

0.615

RAI intron8-2g RAI intron8-3c

0.051 (0.05)

0.084 (0.11)

0.079 (0.04)

0.113

  1. 1) Breast cancer before age 55
  2. 2) Breast cancer at age 55 or older
  3. 3) Haplotype frequency
  4. 4) P-value for haplotype frequency in comparison to the haplotype frequency of controls, all ages.