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Table 2 Association of SNPs rs1799969 G241R and rs5498 E469K in the ICAM-1 gene between T1D with DN and T1D without DN

From: Evaluation of the association between the common E469K polymorphism in the ICAM-1 gene and diabetic nephropathy among type 1 diabetic patients in GoKinD population

SNP ID

Position*

SNP type

Groups

Genotypes (%)

MAF

Heterozygous

Allele positivity

rs1799969

Exon 4

R241G

T1D without DN

AA

AG

GG

   
 

1657594

R = A/G

   All

10 (1.61)

123 (19.84)

487 (78.55)

0.115

  
   

   Male

3 (1.20)

52 (20.71)

196 (78.09)

0.116

  
   

   Female

7 (1.90)

71 (19.24)

291 (78.86)

0.115

  
   

T1D with DN

      
   

   All

3 (0.46)

130 (19.73)

526 (79.81)

0.103

P = 0.877

P = 0.576

   

   Male

1 (0.29)

77 (22.12)

270 (77.59)

0.114

P = 0.721

P = 0.884

   

   Female

2 (0.64)

53 (17.04)

256 (82.32)

0.092

P = 0.413

P = 0.258

rs5498

Exon 6

E469K

T1D without DN

GG

GA

AA

   
 

1658485

R = A/G

   All

121 (19.58)

326 (52.75)

171 (27.67)

0.460

  
   

   Male

50 (20.08))

130 (52.21)

69 (27.71)

0.462

  
   

   Female

71 (19.24)

196 (53.12)

102 (27.64)

0.458

  
   

T1D with DN

      
   

   All

141 (21.30)

311 (46.98)

210 (31.72)

0.448

P = 0.052

P = 0.113

   

   Male

75 (21.43)

176 (50.28)

99 (28.29)

0.466

P = 0.766

P = 0.853

   

   Female

66 (21.15)

135 (43.27)

111 (35.58)

0.428

P = 0.010¤

P = 0.026#

  1. *Contig accession number is NT_011295. T1D = type 1 diabetic patients, and DN = diabetic nephropathy. MAF = minor allele frequency.
  2. ¤Odd ratio = 0.633 (CI 95% 0.447–0.895); #For the G allele Odd ratio = 0.692 (CI 95% 0.500–0.958).