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Table 3 Minor allele frequency and associated p-values for markers showing nominal significant allelic effect

From: The estrogen hypothesis of Schizophrenia implicates glucose metabolism: Association study in three independent samples

     

Allelic association adjusted for

   

Minor allele frequency

Nationality

Gender

Gene

Marker

Variants1

Cases

Controls

OR

CI (95%)

Pnat (PBD)2

Psex (PBD)3

MAPK14

rs9470207

C/T

0.01

0.02

0.52

(0.30–0.92)

0.02 (0.25)

0.02 (0.97)

MAPK14

rs6908372

T/A

0.01

0.02

0.54

(0.31–0.96)

0.03 (0.25)

0.03 (0.93)

MAPK14

rs9462156

A/G

0.01

0.02

0.56

(0.32–1.00)

0.04 (0.36)

0.04 (0.91)

PCK1

rs1040566

C/A

0.11

0.09

1.27

(1.02–1.59)

0.04 (0.82)

0.05 (0.23)

FBP1

rs4129219

C/T

0.19

0.17

1.20

(1.01–1.43)

0.04 (0.92)

0.09 (0.45)

  1. OR: odds ratio, CI(95%): 95% confidence interval for the OR
  2. 1 The minor allele is give prior to the major allele
  3. 2P-values are for the Cochrane-Mantel-Haenszel tests adjusted for potential presence of stratification between countries. P-values for the Breslow-Day test statistics for odds ratio heterogeneity between countries are given in ()
  4. 3P-values are for the Cochrane-Mantel-Haenszel tests adjusted for potential presence of stratification between men and women in all 3 countries. P-values for the Breslow-Day test statistics for OR heterogeneity between gender are given in ()