Association of limbic system-associated membrane protein (LSAMP) to male completed suicide

Must, Anne; Tasa, Gunnar; Lang, Aavo; Vasar, Eero; Kõks, Sulev; Maron, Eduard; Väli, Marika

doi:10.1186/1471-2350-9-34

BMC Medical Genetics

Table 1 Association of single markers in LSAMP gene with completed suicide.

From: Association of limbic system-associated membrane protein (LSAMP) to male completed suicide

Name	Pos 5'	Area	Alleles (major/minor)	MAF* case	MAF* control	Chi square	P value**	HWE p value
rs16824996	-23333	5' flanking region	T/C	0.86	0.86	0.06	0.814	1.000
rs6787168	-20108	5' flanking region	T/C	0.72	0.7	1.06	0.303	0.443
rs4831140	-8362	5' flanking region	A/T	0.83	0.81	0.83	0.363	0.766
rs4831097	14146	intron 1	C/T	0.89	0.88	1.03	0.309	0.927
rs9289051	46772	intron 1	G/T	0.9	0.87	3.63	0.057	1.000
rs17647013	65337	intron 1	C/T	0.9	0.9	0.05	0.825	0.487
rs988803	78700	intron 1	T/A	0.8	0.79	0.47	0.494	0.200
rs7634137	94215	intron 1	T/C	0.83	0.8	1.19	0.276	0.165
rs1920191	121973	intron 1	G/A	0.75	0.73	0.58	0.446	0.260
rs2100807	140388	intron 1	A/G	0.84	0.82	0.84	0.361	0.601
rs1461131	163706	intron 1	G/A	0.61	0.63	0.38	0.538	0.939
rs16824691	181606	intron 1	T/A	0.8	0.78	0.59	0.442	0.027
rs4831129	182935	intron 1	T/G	0.74	0.68	4.19	0.041	0.180
rs4831089	192350	intron 1	G/A	0.61	0.64	1.24	0.266	0.774
rs9874470	198730	intron 1	T/C	0.74	0.68	4.13	0.042	0.078
rs6438308	209904	intron 1	G/C	0.81	0.78	1.45	0.228	0.036
rs4831124	218505	intron 1	T/C	0.66	0.63	1.59	0.208	0.551
rs2944425	565336	intron 3	C/T	0.61	0.57	1.66	0.197	0.997
rs9830559	568061	intron 3	T/C	0.6	0.62	0.76	0.384	0.578
rs1464140	569000	intron 3	T/C	0.82	0.81	0.05	0.821	0.845
rs10511350	573847	intron 3	G/C	0.91	0.9	0.49	0.485	0.757
rs6763835	590546	intron 4	C/T	0.64	0.61	0.9	0.344	0.652
rs4416377	599008	intron 4	T/C	0.79	0.78	0.6	0.437	0.010
rs2918213	611939	intron 6	C/T	0.68	0.63	3.98	0.046	0.287
rs2918215	616902	intron 6	G/A	0.93	0.89	4.1	0.043	0.385
rs2918217	617998	intron 6	G/A	0.87	0.86	0.33	0.565	0.423
rs9822311	625727	intron 6	G/C	0.71	0.68	1.06	0.303	0.020
rs2289271	635618	3' flanking region	G/A	0.59	0.54	3.21	0.073	0.801
rs2918239	682816	3' flanking region	T/G	0.85	0.84	0.46	0.498	0.787
rs2918206	715846	3' flanking region	C/T	0.59	0.56	1.16	0.282	0.054

* MAF = major allele frequency
** not corrected for multiple testing

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