From: Genetic and functional association of FAM5C with myocardial infarction
SNP | LOCATION (bp) | Alleles | LINKAGE TEST (df = 3) | ASSOCIATION TEST (df = 1) | OTHER LINKED VARIANTS (df = 2) | CATHGEN MI Logistic regression†| CATHGEN Minor Allele Frequency | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  | Major | Minor | LOD | pvalue | LOD | pvalue | LOD | pvalue | Allele pvalue | Allele OR (95% CI)* |  |
RS7514392 | 188,323,178 | C | g | 2.95 | 0.004 | 0.33 | 0.220 | 1.69 | 0.020 | - | - | - |
RS10920501 | 188,328,568 | A | t | 2.98 | 0.003 | 0.96 | 0.040 | 2.27 | 0.005 | 0.018 | 0.612 (0.408–0.919) | 0.18 |
RS12142564 | 188,338,626 | C | t | 2.80 | 0.005 | 1.43 | 0.010 | 2.53 | 0.003 | 0.322 | 0.799 (0.508–1.257) | 0.11 |
RS2185836 | 188,349,217 | A | g | 2.89 | 0.004 | 0.76 | 0.060 | 2.82 | 0.002 | 0.273 | 0.791 (0.521–1.202) | 0.45 |
RS2419370 | 188,375,504 | T | c | 2.50 | 0.009 | 0.56 | 0.110 | 2.49 | 0.003 | 0.003 | 1.925 (1.251–2.961) | 0.44 |
RS2990996 | 188,411,850 | C | a | 3.19 | 0.002 | 0.16 | 0.400 | 3.18 | 0.001 | 0.115 | 1.441 (0.915–2.271) | 0.50 |
RS815343 | 188,422,256 | C | t | 2.97 | 0.003 | 0.34 | 0.210 | 2.31 | 0.005 | 0.005 | 0.574 (0.392–0.842) | 0.39 |
RS1891586 | 188,430,617 | T | g | 2.95 | 0.004 | 0.04 | 0.700 | 2.93 | 0.001 | 0.003 | 0.563 (0.385–0.823) | 0.23 |
RS9427746 | 188,438,263 | G | c | 2.86 | 0.004 | 0.01 | 0.810 | 2.50 | 0.003 | 0.007 | 0.587 (0.399–0.863) | 0.40 |
RS10920678 | 188,506,530 | G | a | 2.99 | 0.003 | 0.01 | 0.850 | 2.77 | 0.002 | 0.159 | 0.753 (0.508–1.117) | 0.43 |
RS480692 | 188,526,284 | T | c | 3.29 | 0.002 | 0.41 | 0.200 | 3.42 | 0.000 | 0.028 | 1.591 (1.052–2.405) | 0.43 |
RS12724000 | 188,618,300 | C | t | 2.78 | 0.005 | 0.04 | 0.660 | 2.60 | 0.003 | 0.031 | 0.645 (0.434–0.961) | 0.17 |
RS872177 | 188,659,068 | T | a | 2.93 | 0.004 | 0.05 | 0.600 | 2.90 | 0.001 | 0.188 | 0.776 (0.533–1.132) | 0.31 |
RS2134098 | 188,660,894 | G | c | 2.82 | 0.005 | 0.89 | 0.040 | 3.00 | 0.001 | 0.131 | 0.679 (0.411–1.122) | 0.08 |
RS10920722 | 188,694,717 | A | t | 2.65 | 0.007 | 0.07 | 0.600 | 2.37 | 0.004 | 0.009 | 0.589 (0.397–0.874) | 0.19 |
RS10920725 | 188,707,160 | T | c | 2.65 | 0.007 | 0.13 | 0.400 | 2.45 | 0.004 | 0.007 | 0.584 (0.394–0.865) | 0.20 |
RS11581737 | 188,726,896 | G | a | 2.87 | 0.004 | 0.18 | 0.400 | 2.76 | 0.002 | 0.031 | 0.642 (0.429–0.960) | 0.16 |