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Table 2 Haplotypes and haplotype frequencies in haploblock 1 as defined by default settings using Haploview version 3.2

From: Genetic association study of synphilin-1in idiopathic Parkinson's disease

Haplotype block association
Haplotype Haploblock 1 MAF Chi-square p-value
GAAT Haplotype A 0.35 0.13 0.72
GCAT Haplotype B 0.34 0.18 0.67
AAGC Haplotype C 0.28 0.01 0.93
AAGT Haplotype D 0.02 0.35 0.55
  1. Highly polymorphic markers were used for single marker (table 1) and haplotype association analysis. MAF-Minor allele frequency. P-values calculated using 10 000 permutations.