Table 5 The number of SNPs identified for the transferrin gene from the four different data sources with different coverage. Figure 1 shows the coverage of each data set, N is the number of Caucasian individuals sequenced/typed.
From: SNP selection for genes of iron metabolism in a study of genetic modifiers of hemochromatosis
Resequencing | HapMap | HapMap | |||
|---|---|---|---|---|---|
HealthIron N = 188 | NHLBI RS&G N = 47 | SeattleSNPs N = 23 | N = 30 trios Phase 1 | N = 30 trios Mar 2006 | |
Total No. SNPs | 31 | 59 | 128 | 12 | 81 |
No. SNPs ≥ 3% MAF | 17 | 43 | 101 | 11 | 38 |
Tag SNPs with Tagger | 13 | 20 | 31 | 7 | 17 |