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Table 3 Results of GEE General Genetic Effects Model for Long-term Average Blood Pressure Phenotypes and Arterial Stiffness

From: Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness

Phenotype

SNP

Chr.

Position

P value*

Gene

Diastolic Blood Pressure (long-term average)

DBP

rs7591163

2

228,423,620

2.90 × 10-7

CCL20, WDR69

DBP

rs1901167

5

40,996,921

6.40 × 10-5

C7

DBP

rs6829806

4

85,916,019

8.10 × 10-5

CDS1

DBP

rs6796000

3

189,874,213

1.10 × 10-4

LPP

DBP

rs3096277

16

82,321,705

1.40 × 10-4

CDH13

DBP

rs969049

4

99,346,035

1.40 × 10-4

 

DBP

rs10503497

8

14,326,753

1.40 × 10-4

SGCZ

DBP

rs2262138

19

16,213,403

2.10 × 10-4

FAM32A, AP1M1

DBP

rs10509333

10

72,737,658

3.70 × 10-4

UNC5B, SLC29A3

DBP

rs933296

12

109,837,230

4.10 × 10-4

MYL2

Systolic Blood Pressure (long-term average)

SBP

rs3096277

16

82,321,705

9.90 × 10-8

CDH13

SBP

rs1721359

2

228,460,118

1.00 × 10-5

CCL20, WDR69

SBP

rs225942

14

29,595,139

5.30 × 10-5

PRKD1

SBP

rs298988

4

119,867,850

7.80 × 10-5

SEC24D

SBP

rs10514096

5

76,700,940

1.10 × 10-4

PDE8B

SBP

rs10512245

9

95,771,366

1.40 × 10-4

 

SBP

rs294593

5

163,000,000

1.80 × 10-4

MAT2B

SBP

rs6085660

20

6,639,069

1.90 × 10-4

BMP2

SBP

rs6796000

3

190,000,000

2.20 × 10-4

LPP

SBP

rs575121

12

117,000,000

2.20 × 10-4

TAOK3

Tonometry

MAP

rs3773643

3

30,685,247

1.99 × 10-7

TGFBR2

FW

rs3793427

8

17,188,201

1.96 × 10-6

VPS37A

RW

rs6492654

13

92,688,671

2.28 × 10-6

GPC6

CF-PWV

rs1367248

2

124,734,834

2.88 × 10-6

CNTNAP5

CF-PWV

rs10521232

17

13,480,529

3.88 × 10-6

HS3ST3A1

FW

rs3766680

1

173,563,0070

4.15 × 10-6

TNR

RW

rs1371924

3

144,732,760

4.44 × 10-6

SLC9A9

RW

rs10488172

7

132,985,716

8.49 × 10-6

EXOC4

FW

rs10507534

13

44,724,220

1.05 × 10-5

GTF2F2

FW

rs719856

6

47,702,681

1.21 × 10-5

CD2AP

  1. *P values from 2 degree of freedom test
  2. CB-PWV = carotid-brachial pulse wave velocity; CF-PWV = carotid-femoral pulse wave velocity; DBP = diastolic blood pressure; FW = forward wave amplitude; MAP = mean arterial pressure; RW = reflected wave amplitude; SBP = systolic blood pressure
  3. Minor allele frequency >= 0.20, HWE P value >= 0.05, call rate >= 0.80