From: Genome-wide association with select biomarker traits in the Framingham Heart Study
Trait | SNP rs ID | Chr | Physical location (bp) | GEE P-value | FBAT P-value | IN/NEAR gene |
---|---|---|---|---|---|---|
3a. SNPs significant for 3 correlated phenotypes at exam 7 by either GEE or FBAT at p < 0.01 | ||||||
Interleukin-6, C-reactive protein and Fibrinogen | rs10511884 | 9 | 31668988 | 5.7*10-5 | 0.0065 | Â |
 | rs1887027 | 10 | 6153788 | 2.6*10-4 | 0.19 | IL2RA, RBM17 |
 | rs2831617 | 21 | 28481515 | 6.2*10-4 | 0.0027 |  |
 | rs2831620 | 21 | 28481869 | 6.4*10-4 | 0.0022 |  |
 | rs2831618 | 21 | 28481749 | 6.4*10-4 | 0.0020 |  |
 | rs2044401 | 9 | 31659518 | 6.6*10-4 | 0.12 |  |
 | rs1457590 | 3 | 21530978 | 0.0019 | 0.16 | ZNF659 |
 | rs6848323 | 4 | 113286305 | 0.0022 | 0.14 |  |
 | rs3110134 | 8 | 60260538 | 0.0025 | 0.12 |  |
 | rs2016740 | 4 | 113238018 | 0.0039 | 0.17 |  |
 | rs719006 | 15 | 59210481 | 0.0044 | 0.76 | RORA |
 | rs877936 | 4 | 113238472 | 0.0055 | 0.31 |  |
 | rs1436136 | 4 | 113421130 | 0.0062 | 0.039 |  |
 | rs1436336 | 3 | 106156256 | 0.0067 | 0.0040 |  |
 | rs698270 | 3 | 137592210 | 0.0086 | 0.020 | STAG1 |
 | rs847428 | 7 | 16803192 | 0.019 | 0.025 |  |
 | rs2359763 | 3 | 23424931 | 0.024 | 0.0025 |  |
 | rs7969455 | 12 | 7757402 | 0.059 | 0.0015 | DPPA3 |
 | rs10503717 | 8 | 22634817 | 0.06 | 0.0028 |  |
 | rs4899940 | 14 | 87623621 | 0.11 | 0.0019 |  |
3b. Combined phenotypes within a specific biological domain | ||||||
C-reactive protein: exams 2, 5, 6, 7 | rs2808629 | 1 | 156489869 | 6.9*10-5 | 4.7*10-4 | NFIA, CRP |
 | rs2794520 | 1 | 156491889 | 6.1*10-5 | 4.85*10-4 | FCER1A, CRP |
 | rs6563212 | 13 | 35380415 | 7.3*10-4 | 0.30 | DCAMKL1 |
 | rs11626844 | 14 | 72413330 | 5.1*10-3 | 0.17 | OR10J1, DPF3 |
 | rs9319160 | 13 | 84918646 | 0.002 | 0.09 |  |
 | rs910232 | 1 | 17143820 | 0.002 | 0.01 | MAGI1, PADI2 |
Liver function: Alkaline phosphatase; AST; ALT; GGT | rs4911146 | 20 | 32103708 | 0.01 | 8.4*10-6 | ARL6IP6, RALY |
 | rs953402 | 3 | 5986639 | 0.01 | 9.1*10-6 | FMNL2 |
Vitamin D, Vitamin K phylloquinone & Vitamin K % undercarboxylated osteocalcin | rs1376544 | 4 | 180293700 | 0.02 | 9.2*10-6 | Â |