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Table 2 Genotyped ESR1 and ESR2 SNPs

From: Impact of estrogen receptor gene polymorphisms and mRNA levels on obesity and lipolysis – a cohort study

Marker

Gene position

Chromosome position

Alleles

Common allele (%)

Call rate (%)

Chi2 of HWE

ESR1 (Chromosome 6)

rs488133

5'

152217558

C > T

68

98

0.45

rs532010

5'

152223032

A > G

65

98

0.95

rs11155813

intron 1

152241549

T > C

88

96

0.06

rs1709182

intron 2

152267471

T > C

66

96

0.81

rs1709183

intron 2

152286110

T > C

72

98

0.4

rs9340835

intron 2

152292045

G > A

68

98

0.06

rs6557170

intron 3

152295218

G > A

79

95

0.97

rs2347867

intron 3

152321964

A > G

68

98

0.17

rs9397456

intron 3

152339266

G > A

80

98

0.15

rs12154178

intron 3

152343194

A > C

72

98

0.59

rs3020317

intron 4

152370855

T > C

82

98

0.03

rs1884051

intron 4

152375393

A > G

71

98

0

rs1884054

intron 4

152383680

A > C

67

98

0.47

rs7754762

intron 4

152403651

T > A

87

97

1.61

rs7757956

intron 4

152409254

T > A

86

98

2.69

rs9340954

intron 4

152412286

T > G

70

98

2.89

rs3020368

intron 5

152463304

C > T

91

97

0.05

rs3778082

intron 6

152479778

G > A

86

95

1.76

rs2982896

intron 6

152491607

C > T

77

97

0.01

rs3020383

intron 7

152508893

G > C

92

97

0.28

rs3778099

intron 7

152510689

T > C

87

97

1.18

rs2813544

3'

152517696

A > G

79

98

0.88

rs1543403

3'

152520818

G > C

52

96

1.48

ESR2 (Chromosome 14)

rs3020450

5'

63838055

C > T

70

93

6.29a

rs1271572

5'

63831670

C > A

54

98

1.03

rs1887994

intron 1

63830364

C > A

89

97

0.28

rs7159462

intron 1

63828629

C > T

92

97

0.14

rs1269056

intron 3

63813643

C > T

56

97

1.3

rs7154455

intron 3

63806413

G > C

64

83

0.23

rs1256061

intron 7

63773346

G > T

50

97

1.89

rs1256063

intron 7

63771970

G > A

91

94

0.27

rs4986938

3'

63769569

G > A

62

100

0.56

rs928554

3'

63763948

A > G

56

100

2.8

rs1152582

3'

63762383

C > G

56

98

0.71

  1. a) HWE among controls n.s.