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Table 2 SNPs descriptives for young, adult and combined cohorts

From: Exploring the functional role of the CHRM2 gene in human cognition: results from a dense genotyping and brain expression study

  

rs#

Positiona

Tagged SNP

LDBLOCK

MA

MAF Young

MAF Adult

HWE-pval

%Geno

1

5'UTR

rs7797223

136198443

  

T

0.25

0.26

0.77

95.6

2

 

rs6957496

136202377

1

 

G

0.09

0.11

0.02

96.6

3

intron 3

rs12533282

136207518

1, 4, 5,

1(1 kb)

G

0.18

0.17

0.40

98.6

4

 

rs10488595

136208970

  

A

0.18

0.17

0.71

97.7

5

 

rs10488596

136209134

  

T

0.18

0.16

0.37

97.2

6

 

rs1424569

136211219

  

A

0.44

0.47

0.02

94.8

7

 

rs17415326

136214872

  

C

0.02

0.05

0.48

95.1

8

 

rs1424548

136219956

  

T

0.37

0.36

0.53

98.2

9

 

rs4475425

136225739

 

2 (5 Kb)

A

0.21

0.24

0.87

94.8

10

 

rs1364405

136231025

41

 

A

0.35

0.33

0.08

97.9

11

 

rs1364402

136234903

 

3 (17 kb)

C

0.12

0.11

1.00

98.7

12

 

rs2350780

136243509

  

G

0.40

0.39

0.59

98.8

13

 

rs7810473

136246997

  

G

0.42

0.42

0.30

98.9

14

 

rs1364404

136248827

  

T

0.31

0.32

0.62

98.1

15

 

rs1469179

136251497

22

 

A

0.44

0.46

0.18

97.3

16

 

rs17496259

136251883

  

A

0.31

0.31

0.48

95.8

17

 

rs17411478

136251909

  

T

0.31

0.32

0.37

99.1

18

 

rs10488600

136255998

  

T

0.10

0.13

0.00

98.0

19

 

rs17494589

136256129

26

 

A

0.20

0.18

0.07

94.9

20

 

rs17168817

136258808

  

T

0.08

0.06

0.87

99.2

21

 

rs1364409

136262573

 

4 (12 kb)

T

0.32

0.35

0.13

96.4

22

 

rs6947206

136265651

  

C

0.46

0.48

0.12

94.0

23

 

rs7782965

136274673

21, 26, 27

 

T

0.32

0.35

0.45

90.4

24

 

rs17494540

136277380

  

C

0.20

0.18

0.01

96.3

25

 

rs1424387

136282543

  

C

0.31

0.31

0.39

99.0

26

 

rs1378646

136285541

 

5 (2 kb)

G

0.35

0.37

0.32

98.8

27

intron 4

rs1158586

136287676

  

G

0.34

0.40

0.42

93.0

28

 

rs324582

136301147

  

G

0.07

0.10

0.02

96.4

29

 

rs2061174

136311940

30

6 (10 kb)

G

0.34

0.35

0.93

84.6

30

 

rs7799047

136322098

  

G

0.34

0.35

1.00

93.5

31

intron 5

rs17411561

136332728

14, 16, 17, 25

 

C

0.32

0.25

0.25

87.7

32

 

rs420817

136337943

 

7 (11 kb)

C

0.48

0.47

0.21

95.7

33

 

rs324640

136339536

32

 

G

0.46

0.50

0.17

86.2

34

 

rs10488602

136341043

  

C

0.22

0.23

0.43

98.1

35

 

rs324647

136343292

  

C

0.14

0.15

0.13

95.9

36

 

rs324650

136344201

  

T

0.47

0.48

0.08

85.2

37

 

rs324651

136349801

35

 

T

0.14

0.14

0.13

93.1

38

3'UTR

rs8191992

136351848

 

8 (0.2 kb)

T

0.45

0.48

0.60

96.5

39

 

rs8191993

136352103

  

G

0.35

0.35

0.93

94.9

40

 

rs7780181

136357075

  

G

0.42

0.44

0.83

98.7

41

 

rs1424543

136360300

  

C

0.36

0.32

0.01

95.4

42

 

rs11971309

136362695

8

 

T

0.38

0.37

0.57

90.0

43

 

rs11773032

136391582

  

A

0.00

0.01

1.00

98.1

  1. a Chromosomal single nucleotide position (SNP) position based on Build 36.1. Tag-SNPs are depicted in bold. Abbreviations: LD, Linkage disequilibrium; MA, Minor Allele, MAF Minor Allele Frequency; HWE, Hardy-Weinberg Equilibrium