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Table 1 Genes with lower expression in mutant samples on microarray analysis. This table contains a list of genes with lower expression in mutant T-lymphocyte clones by one-way ANOVA analysis (p < 0.05). * indicates >1.5-fold change in expression level and ** indicates >2-fold change in expression level.

From: Expression profiling of clonal lymphocyte cell cultures from Rett syndrome patients

No. Gene Name P-value Common name Genbank No. Description
1** 201160_s_at 0.000593 CSDA AL556190 cold shock domain protein A
2* 201417_at 0.00108 SOX4 AL136179 SRY (sex determining region-Y) box 4
3 202565_s_at 0.00385 SVIL NM_003174 supervillin
4 204860_s_at 0.00453 BIRC1 AI817801 Transcribed seq with strong similarity BIR1
5 215333_x_at 0.00459 GSTM1 X08020 glutathione S-transferase M1
6* 210763_x_at 0.00546 NCR3 AF031137 natural cytotoxicity triggering receptor 3
7** 217979_at 0.00821 TM4SF13 NM_014399 transmembrane 4 superfamily member 13
8 208524_at 0.0117 GPR15 NM_005290 G protein-coupled receptor 15
9** 215440_s_at 0.012 BEXL1 AL523320 hypothetical protein FLJ10097
10 213193_x_at 0.0157 TRBC1 AL559122 T cell receptor beta chain BV20S1 BJ1-5 BC1 mRNA
11 220131_at 0.0174 FXYD7 NM_022006 FXYD domain containing ion transport regulator 7
12 204550_x_at 0.0175 GSTM1 NM_000561 glutathione S-transferase M1
13 212739_s_at 0.0186 NME4 AL523860 non-metastatic cells 4, protein expressed in
14* 220684_at 0.0187 TBX21 NM_013351 T-box 21
15 203030_s_at 0.0195 PTPRN2 AF007555 protein tyrosine phosphatase, receptor type N polypeptide 2
16 219693_at 0.0232 AGPAT4 NM_020133 1-acylglycerol-3-phosphate O-acyltransferase 4
17* 219654_at 0.0245 PTPLA NM_014241 protein tyrosine phosphatase-like, member a
18 217764_s_at 0.0245 RAB31 AF183421 RAB31, member RAS oncogene family
19* 217671_at 0.0247 RFX3 BE466926 regulatory factor X, 3 (Influences HLA class II expression)
20** 204232_at 0.025 FCER1G NM_004106 Fc fragment of IgE, high affinity receptor for γ-polypeptide
21* 1405_i_at 0.0298 CCL5 M21121 chemokine (C-C motif) ligand 5
22** 206170_at 0.0308 ADRB2 NM_000024 adrenergic, beta-2-, receptor, surface
23** 211583_x_at 0.0317 NCR3 AF031136 natural cytotoxicity triggering receptor 3
24 202279_at 0.0328 C14orf2 NM_004894 chromosome 14 open reading frame 2
25 214012_at 0.0333 ARTS-1 BE551138 type 1 TNF receptor shedding aminopeptidase regulator
26 204396_s_at 0.0346 GRK5 NM_005308 G protein-coupled receptor kinase 5
27** 211010_s_at 0.0349 NCR3 AF031138 natural cytotoxicity triggering receptor 3
28 208791_at 0.0351 CLU M25915 clusterin
29** 219529_at 0.0383 CLIC3 NM_004669 chloride intracellular channel 3
30 217104_at 0.0385 LOC283687 AL109714 hypothetical protein LOC283687
31 213280_at 0.0397 GARNL4 AK000478 GTPase activating RANGAP domain-like 4
32 202234_s_at 0.04 SLC16A1 BF511091 solute carrier family 16, member 1
33** 215006_at 0.0404   AK023816 CDNA FLJ13754 fis, clone PLACE3000362
34 204883_s_at 0.0409 HUS1 AI968626 HUS1 checkpoint homolog (S. pombe)
35** 217963_s_at 0.0409 NGFRAP1 NM_014380 nerve growth factor receptor (TNFRSF16) ass. protein 1
36** 212070_at 0.0419 GPR56 AL554008 G protein-coupled receptor 56
37** 202363_at 0.042 SPOCK1 AF231124 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican)
38* 206974_at 0.0427 CXCR6 NM_006564 chemokine (C-X-C motif) receptor 6
39 200965_s_at 0.0433 ABLIM1 NM_006720 actin binding LIM protein 1
40 219457_s_at 0.045 RIN3 NM_024832 Ras and Rab interactor 3
41** 213915_at 0.0452 NKG7 NM_005601 natural killer cell group 7 sequence
42 215411_s_at 0.0463 C6orf4 AL008730  
43* 212274_at 0.0484 LPIN1 AV705559 AV705559ADB Homo sapiens cDNA clone ADBAPE04 5'
44 219155_at 0.049 PITPNC1 NM_012417 phosphatidylinositol transfer protein, cytoplasmic 1